Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32376
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    29   0.64 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   3.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.4  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 12  RFHSANANRIKMFPLRRVVGNKILEQWRSQATAAVG--AKTQMKAYSTE-VTPRPL 170
           R +  N NR  +  L   V  K   QWRSQ    +   AKT  + + T+ +  RPL
Sbjct: 35  RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPL 90


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 92  EVPGNGCRWSKDSDESIQHRSNPTTFD 172
           +V GN  +  K SDE ++ R+ P TF+
Sbjct: 510 DVLGNAHKKFKGSDEVVESRAGPVTFE 536


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 21  SANANRIKMFP-LRRVVGN-KILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTM-LTEDE 191
           + NAN  ++ P L+  +   K+LEQ   +    V  + + K Y++    RPL+  +TE  
Sbjct: 439 NGNANPSRLNPALKNYMEELKLLEQQNKKRLLLVSQEKERKGYTSASPDRPLSQTITESS 498

Query: 192 LAMRETS 212
           +A  +++
Sbjct: 499 VAKTKST 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,353
Number of Sequences: 5004
Number of extensions: 57626
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)