Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32376
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.17 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.17 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.17 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    27   0.17 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    24   1.6  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    24   1.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    24   1.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    24   1.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    24   1.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    24   1.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    24   1.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    24   1.6  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.6  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 MLQVHYTL*LYSNDIQYSILRGHCDLKCLHEYLIFP 341
           ++ VH+ L +Y N     ++R H  L C     IFP
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFP 194


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 MLQVHYTL*LYSNDIQYSILRGHCDLKCLHEYLIFP 341
           ++ VH+ L +Y N     ++R H  L C     IFP
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFP 194


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 MLQVHYTL*LYSNDIQYSILRGHCDLKCLHEYLIFP 341
           ++ VH+ L +Y N     ++R H  L C     IFP
Sbjct: 210 LIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFP 245


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 448 MLQVHYTL*LYSNDIQYSILRGHCDLKCLHEYLIFP 341
           ++ VH+ L +Y N     ++R H  L C     IFP
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFP 194


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNSNKYS-*VVANIHY 542
           IS L N+   + Y  Y NN N Y+  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINY 114


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           IS L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  ISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNSNKYS 518
           IS L N+   + Y  Y NN N Y+
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYN 338


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 447 ISKLPNSDAVTKYCRYENNS--NKYS*VVANIHY 542
           +S L N+   + Y  Y NN+  N Y  +  NI+Y
Sbjct: 82  VSSLSNNYNYSNYNNYNNNNNYNNYKKLYYNINY 115


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 523 TYEYLFELFSYLQYFVTASLLG 458
           TY Y F    Y+  F+T  + G
Sbjct: 224 TYRYGFSFLLYVSGFITTEVAG 245


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 50  PITTRCWQQDFR 85
           P+   CW +DFR
Sbjct: 387 PVIYACWSRDFR 398


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 87  QWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRETS 212
           QWR    A V  KTQ++ Y  E+      +    +LA   TS
Sbjct: 36  QWRKPKPAMVEEKTQLR-YLEELNALRTELGASTKLATDTTS 76


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 436 HYTL*LYSNDIQYSILRGHCDLKCLHEYLIFPH 338
           HY L LY +     +++    L C   +LI+PH
Sbjct: 141 HY-LWLYKDKTILYMVKLTLKLSCAMNFLIYPH 172


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 292 YETNSKDFNKRLYVIQY 242
           Y  N+ ++NK+LY   Y
Sbjct: 104 YNYNNNNYNKKLYYKNY 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,516
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 23
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)