Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32370
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine r...    30   1.8  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    28   7.1  
Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF039046-10|AAB94220.2|  233|Caenorhabditis elegans Serpentine
           receptor, class j protein23, isoform a protein.
          Length = 233

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 263 SIFDHYFISSY*ISTLRSHGHRHRIAVEIPRSMQ 364
           S   H+F  S  IS LRSH H H +   +P++MQ
Sbjct: 188 SSLSHFFRPSIRISILRSHRH-HFLCSNVPQAMQ 220


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 515 NTPLIHNILDYIYIHTHINLLLVFRFLIFERYDLRPDAAY 396
           N   I+N+ +YIY      +   F  L+ E Y ++P   Y
Sbjct: 305 NCTWINNLKNYIYSAHDTTIYAFFSALLIEEYAVKPSGGY 344


>Z81039-5|CAB02770.1|  812|Caenorhabditis elegans Hypothetical
           protein C25D7.6 protein.
          Length = 812

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -3

Query: 388 R*NLSTAALHAPWNFYCNAVPVTMTSQGRYSI**YKIVIEN---RDRLV*LRRQIVFYIF 218
           R  +S A +HA  N  C+ +       GRY+   +K  +EN   +D L+  R  ++F + 
Sbjct: 433 RVTISKAGIHAKLNARCSVLAAANPVYGRYNP--FKSPMENIGMQDSLL-SRFDLIFVLL 489

Query: 217 NSHKQDR 197
           + H  D+
Sbjct: 490 DEHDADK 496


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 248 TAKTNSLLHFQFTQAGQVSAKGLSTKCYPFF 156
           TA    L HF+FT+   + +K ++T C+  F
Sbjct: 219 TANLMDLTHFRFTKLDDIFSKIIATGCHAHF 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,126,498
Number of Sequences: 27780
Number of extensions: 282454
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)