Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32367
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    29   0.21 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.28 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.37 
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   0.85 
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    27   1.1  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   2.0  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   3.4  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   3.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   6.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   6.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.0  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.0  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    25   6.0  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   6.0  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    24   7.9  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 359 ILCRWCILGFLFTIAYISRLHRLSRNIRSTTFTCIHI 249
           ++  WCILG  + + +  R+ +   ++ ST+ + +H+
Sbjct: 13  LILLWCILGIAYILFWTHRISKAFASVSSTSDSTVHL 49


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 132  VNSTAYVTNTQPGHDSQGFGSPVSAVVSHAISGAXXXXXXXXACESGAPDVSAEAMQPGD 311
            V STAY T++     +     P S+VVS ++S             S AP V++   +   
Sbjct: 855  VTSTAYTTDSVTSTTALTSQGPSSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSS 914

Query: 312  -IGDGKEETQNAPPTEDES 365
             +G G +   ++  T + S
Sbjct: 915  VVGSGTDSATSSSWTAETS 933


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +2

Query: 5   CGAIADKHGSGLRRCCASHVSKQCSSCRGNCIRNQLAGSVITSKLDCICDE 157
           C +  D   S    CC+      CSS + +C   +  G   T K  C   E
Sbjct: 225 CCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQE 275


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 51  VPVMSQSNVAPVEATVSGTNS---PVVSLPVNSTAYVTNTQPGHDSQGFGSPVSAVVSHA 221
           VPV++Q+N  P+E  + G N    P  +    +  Y   T   +D+   G   S  V + 
Sbjct: 355 VPVLAQTNGGPLETVIDGKNGWLRPRDAKIWGNVIYEATTSTTYDTAAMGEAGSEWVKNE 414

Query: 222 IS 227
            S
Sbjct: 415 FS 416


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 388 SANANPLILSSSVGGAFWVSSLPSPISPGCIASAETS 278
           SA+ N  +LS S G +      PSPISP    S +T+
Sbjct: 345 SAHGNHQVLSFSPGSSPSFIEQPSPISPTSTTSEDTN 381


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +3

Query: 48  VVPVMSQSNVAPVEATVSGTN--SPVVSLPVNSTAYVTNTQPGHDSQGFG---SPVSAVV 212
           VVP  +   V+   A   G N  +PV + P NS+   T  Q       FG    PV   +
Sbjct: 517 VVPNPTNQKVSITGAAADGPNGSAPVDTTPTNSSTTATGAQRKRRKFKFGKQIGPVRCTL 576

Query: 213 SHAISG 230
            + ++G
Sbjct: 577 QNRVTG 582


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 191 QPCECGSVSCDQWCGGK 241
           QPC CG   C  + GGK
Sbjct: 306 QPCYCGEPCCVGYIGGK 322


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 264  ESGAPDVSAEAMQPG-DIGDGKEETQNAPPTEDESIN 371
            E  A +V  + +Q G DI D K+  ++  PTE  SIN
Sbjct: 4357 EDEADEVGDKQLQDGQDISDIKQTGEDTLPTEFGSIN 4393


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 87   EATVSGTNSPVVSLPVNSTAYVTNTQP 167
            E T    NSPV  +P +S+   ++TQP
Sbjct: 1432 EYTSGNNNSPVTKVPGSSSTSSSSTQP 1458


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 403 PPLPTSANANPLILSSSVGGAFWVS--SLPSPISPGCIASAETSGAPLS 263
           PP+  S++ +PL L +     +     SLP PI+     SAE+S + +S
Sbjct: 156 PPILNSSDRSPLSLPTPYPVQYSTQPVSLPQPIAAPAPPSAESSKSTIS 204


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 347 WCILGFLFTIAYISRLHRLSRNIRSTTFTCIHI 249
           WC L  +F I  +  LH+L   + S  FT I I
Sbjct: 298 WCTLNTVFKIREVFTLHQL--QVISLIFTLISI 328


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 39  YGGVVPVMSQSNVAPVEATVSGTNSPVVSLPVNST 143
           YGGV         AP++ T SG+ +P+ S P +++
Sbjct: 338 YGGVNASTYNPPRAPLQRTPSGSLTPLSSRPAHTS 372


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 132 VNSTAYVTNTQPGHDSQGFGSPVSAVVSHAIS 227
           +N T Y  N     +SQ  G+PVS  +  A S
Sbjct: 441 MNKTNYSANQSQNGNSQNSGNPVSQAIDLAKS 472


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 191  AKALTVMSWLCVRHICSRVYW**HYRRVGS*YSCLYRSYIALR 63
            +K L ++S  C  H  +  YW  H R   + Y+ L   Y  L+
Sbjct: 1384 SKTLGIVSLNCGFHARALFYWEQHIRNATAPYAALESDYRVLQ 1426


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 326 FTIAYISRLHRLSRNIRSTTFTCIHIHIAYHRTTDRMRHYRTHRAAKALTVMS 168
           FT AY  + H ++ +     F C     ++ R  D+ RH + H   KA   ++
Sbjct: 581 FTRAYNLKSH-MNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVT 632


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 14  IADKHGSGLRRCCASHVSKQCSSCRGNC 97
           I D+H S LRR   SH  K+    R +C
Sbjct: 117 IRDQHSSYLRRELNSHREKRLQDTRVHC 144


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 21  TSMGLGYGGVVPVMSQS 71
           TS+G GY G  P+ SQS
Sbjct: 337 TSLGAGYLGTAPLASQS 353


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 48  VVPVMSQSNVAPVEATVSGTNSPVVSLPVNS 140
           V  V+S +++A  E+TVS T +    LP N+
Sbjct: 37  VYTVVSGTHLATAESTVSKTITTTKGLPTNA 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,693
Number of Sequences: 5004
Number of extensions: 32645
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)