Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32367
(408 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0381 - 2961422-2963917 33 0.12
06_01_0495 - 3546131-3547588 30 0.62
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 30 0.81
06_01_0496 + 3550006-3550690,3550710-3551446 29 1.4
08_01_0240 + 2001799-2001966,2002105-2002189,2002356-2002496,200... 28 2.5
07_03_1697 - 28795521-28797328,28797430-28797550 28 2.5
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 2.5
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 28 3.3
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 28 3.3
05_01_0192 + 1394342-1396645 28 3.3
01_01_0088 + 688792-691441,691629-693013 28 3.3
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 27 4.3
01_06_0327 + 28506354-28506469,28506568-28507168,28507397-28507531 27 4.3
12_02_0665 + 21670956-21671834,21672563-21672583 27 5.7
08_02_0959 - 23055078-23055177,23055408-23055985 27 5.7
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 27 5.7
06_03_1150 + 28022633-28023374,28023501-28023565 27 5.7
04_04_0459 - 25373687-25374721 27 5.7
12_01_0715 - 6230393-6231559,6233234-6234553 27 7.6
05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570 27 7.6
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 27 7.6
>01_01_0381 - 2961422-2963917
Length = 831
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 3 NVVPSQTSMGLGYGGVVPVMSQSNVAPVEATVSGTNSPVVSL--PVNSTAYVTNTQPGHD 176
N VP++T++ + GG P+M ++ E T+SG + +V+L S A+ TN +
Sbjct: 71 NTVPNRTTVWVANGGE-PIMDAADAGSPELTISGDDGDLVALHPTTKSIAWSTNVSAKNS 129
Query: 177 SQGFGSPVSAVVS 215
+ + + +++
Sbjct: 130 TSNSNNTAAVLLN 142
>06_01_0495 - 3546131-3547588
Length = 485
Score = 30.3 bits (65), Expect = 0.62
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 403 PPLPTSANANPLILSSSVGGAFWVSSLPSPISPGC 299
PP +P IL GG +W+++LPSP + C
Sbjct: 294 PPYLIKTKTSPCIL----GGIYWIAALPSPSTGSC 324
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 29.9 bits (64), Expect = 0.81
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFW 335
PPP PT+ NPL V GA W
Sbjct: 33 PPPTPTTGGWNPLAALVEVPGALW 56
>06_01_0496 + 3550006-3550690,3550710-3551446
Length = 473
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 403 PPLPTSANANPLILSSSVGGAFWVSSLPSPISPGC 299
PP A+P IL GG +W+ +LPSP + C
Sbjct: 280 PPYLALNKASPCIL----GGIYWIVALPSPPTGSC 310
>08_01_0240 +
2001799-2001966,2002105-2002189,2002356-2002496,
2002653-2002766,2002880-2002977,2003081-2003160,
2003274-2003379,2003491-2003618,2004411-2004552,
2004655-2004711,2004892-2005032
Length = 419
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFWVSSLPSP----ISPGCIASAE 284
PPPLP++A P + A ++ PSP + P C+ +A+
Sbjct: 320 PPPLPSAAGRQPSLRREDSAAATAAAAPPSPREDQVCPICLTNAK 364
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 28.3 bits (60), Expect = 2.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +2
Query: 23 KHGSGLRR-CCASHVSKQ-CSSCRG-NCIR 103
+HG CC H KQ C+SCRG +C R
Sbjct: 360 RHGPSCHHGCCPPHHGKQACTSCRGQHCCR 389
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFWVSSLPSPISPGCIASAETS 278
PPP+P S +A+P +SS G A + P P P ++ TS
Sbjct: 316 PPPMPRSRSASPSPSTSSSGSA-GPPAPPPPPPPAAKRTSRTS 357
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 27.9 bits (59), Expect = 3.3
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 99 SGTNSPVVSLP---VNSTAYVTNTQPGHDSQGFGSPVSAVVS 215
SGTNSPVVSL V ++A N Q Q SP + ++S
Sbjct: 619 SGTNSPVVSLSNYNVVTSAAKANEQQKESLQSAKSPANVLLS 660
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 29 GSGLRRCCASHVSKQCSSCRGNCIRNQLAGSVITSKLDC 145
G+G RCCA HV ++ SSC +C A V + LDC
Sbjct: 357 GAGCDRCCACHV-EESSSC--SC-----AALVCSGSLDC 387
>05_01_0192 + 1394342-1396645
Length = 767
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +3
Query: 51 VPVMSQSNVAPVEATVS--GTNS-PVVSLPVNSTAYVTNT----QPGHDSQGFGSPVSAV 209
+P +S + +P +TVS TNS V S P NSTA ++N P H + + A
Sbjct: 293 LPGVSTTTPSPPASTVSMPPTNSVAVASAPANSTAGISNAGSPHPPAHAAVAGAATAGAF 352
Query: 210 VSHAISG 230
V+ + +G
Sbjct: 353 VAVSFAG 359
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 233 RTTDRMRHYRTHRAAKALTVMSWLCV 156
+TT Y HR + TVM W+CV
Sbjct: 265 KTTFAQHLYNDHRTKQHFTVMIWVCV 290
>06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 403 PPLPTSANANPLILSSSVGGAFWVSSLPSPISPGC 299
PP +P IL GG +W++ LPSP + C
Sbjct: 1026 PPYLVLNKTSPCIL----GGIYWIAILPSPPTGSC 1056
>01_06_0327 + 28506354-28506469,28506568-28507168,28507397-28507531
Length = 283
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 78 APVEATVSGTNSPVVSLPVNSTAYVTNTQPGHDSQGFG 191
APVE+ ++ S V+ +PVN + ++ Q S G+G
Sbjct: 156 APVESELARCCSQVIVVPVNGSVLNSSNQSALPSGGYG 193
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 325 LPSPISPGCIASAETSGAPLSH 260
LPSP SP AS +S APL H
Sbjct: 30 LPSPASPLPFASRVSSAAPLRH 51
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 84 VEATVSGTNSPVVSLPVNSTAYVTN 158
V AT++GTN+ LPV ST V N
Sbjct: 39 VFATLNGTNASSSGLPVQSTPLVVN 63
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFWVSSLP---SPISPGCIASAETSGAP 269
P PLP A A+P S G F P SP+SP AS + AP
Sbjct: 106 PLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQASPASPAAP 154
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFWVSSLP---SPISPGCIASAETSGAP 269
P PLP A A+P S G F P SP+SP AS + AP
Sbjct: 106 PLPLPFPAPASPGGAPPSSGSGFPAFPFPFPSSPVSPPSQASPASPAAP 154
>04_04_0459 - 25373687-25374721
Length = 344
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 326 RGNPECTTYRG*KYQRVGVGARRQRWR 406
RGN C ++R +Y+ G G R WR
Sbjct: 101 RGNAFCHSFRYYEYEDAGGGFRETEWR 127
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 45 GVVPVMSQSNVAPVEATVSGTNSPVVSLPVNSTAYVTNT 161
GV+P+ + +V T+ +N+ SLP+N + Y++NT
Sbjct: 507 GVIPIPKEGSV-----TLDYSNNRFSSLPLNFSTYLSNT 540
>05_02_0081 + 6432957-6433289,6433367-6433882,6434283-6434570
Length = 378
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 406 PPPLPTSANANPLILSSSVGGAFWVSSLPSPISPG 302
PPP P S + +P L GG F + SP + G
Sbjct: 173 PPPPPASKSDHPAPLYGEGGGGFSWDAADSPAAGG 207
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 370 LILSSSVGGAFWVSSLPSPISPG 302
L+ S+ VG + +V SLP P SPG
Sbjct: 327 LVWSTGVGPSSFVKSLPFPKSPG 349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,459
Number of Sequences: 37544
Number of extensions: 265967
Number of successful extensions: 1019
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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