Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32363
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   2.2  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.1  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   5.1  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.1  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   5.1  

>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 458 YRSEVAVLFFISGGIVLNNLLXVKYIYTPILFRKKIANKKVE 583
           +R E  +L  +SG  +L  ++ +K  Y P+L RK+ A K +E
Sbjct: 194 WRWEFWILLMLSGVSLLAGVVFLKETYAPVLKRKQ-AKKLLE 234


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 359 HLCLYTCVVSSLIITLGVS*ACTIILSESNIHRYRSEVAVLFFISGGIVLNNLLXVKYIY 538
           ++ +Y  V+S   I  G++   +  +S+S+I  ++ E  +L  +SG  +    L +K  Y
Sbjct: 168 YMVIYFTVLS---IGPGIAPIISGFISQSSIG-WQWEFWILLILSGFNLFWAFLLLKETY 223

Query: 539 TPILFRKK 562
            P+L RKK
Sbjct: 224 PPVLNRKK 231


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 359 HLCLYTCVVSSLIITLGVS*ACTIILSESNIHRYRSEVAVLFFISGGIVLNNLLXVKYIY 538
           ++ +Y  V+S   I  G++   +  +S+S+I  ++ E  +L  +SG  +    L +K  Y
Sbjct: 168 YMVIYFTVLS---IGPGIAPIISGFISQSSIG-WQWEFWILLILSGFNLFWAFLLLKETY 223

Query: 539 TPILFRKK 562
            P+L RKK
Sbjct: 224 PPVLNRKK 231


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 359 HLCLYTCVVSSLIITLGVS*ACTIILSESNIHRYRSEVAVLFFISGGIVLNNLLXVKYIY 538
           ++ +Y  V+S   I  G++   +  +S+S+I  ++ E  +L  +SG  +    L +K  Y
Sbjct: 168 YMVIYFTVLS---IGPGIAPIISGFISQSSIG-WQWEFWILLILSGFNLFWAFLLLKETY 223

Query: 539 TPILFRKK 562
            P+L RKK
Sbjct: 224 PPVLNRKK 231


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 576 FLFAIFFLNNIGVYIYLTXNKLFRTIPPEMKNRTAT 469
           FLF I FLN I  +     NKL+RT+P + +  T+T
Sbjct: 97  FLF-ISFLNFI--FSTRFQNKLYRTLPQDKRTTTST 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,754
Number of Sequences: 5004
Number of extensions: 43371
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)