Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32363
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105...    30   1.7  
07_01_0632 + 4729426-4731300                                           29   2.3  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    29   2.3  

>02_05_0061 +
           25506648-25509399,25509564-25509901,25510392-25510593,
           25510779-25510854,25512036-25512294
          Length = 1208

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 597 FNYALSTFLFAIFFLNNIGVYIYLTXNKLFRTIPPEMKN 481
           FN  + T   ++F +  + +Y+ ++ N L  +IPPE+ N
Sbjct: 504 FNNFIGTIPTSLFNITTLSIYLDISYNHLDGSIPPEVGN 542


>07_01_0632 + 4729426-4731300
          Length = 624

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 371 YTCVVSSLIITLGVS*ACTIILSESNIHRYRSEVA 475
           Y+C  ++L+I L +   C +I  E  IHR R E+A
Sbjct: 274 YSCAAAALLIVLFLP-LCVVIKQEFKIHRERLELA 307


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +2

Query: 275 AFSCNTFAI*IFCILLIVDI**GCHA*Y---HLCLYTCVVSSLIITLGVS*ACTIILSES 445
           AFSCN F + +F IL ++      HA +   HL L+ C++  L+  L     C ++L  S
Sbjct: 52  AFSCNLFQLVLFEILPVL----SKHARFLNWHLDLF-CLILLLVFVLPYY-HCYLLLRNS 105

Query: 446 NIHRYRS-EVAVLFFI 490
            + R R+  VA LF +
Sbjct: 106 GVRRERALLVAALFLL 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,896
Number of Sequences: 37544
Number of extensions: 230196
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)