Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32363
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF068717-2|AAC17763.1|  325|Caenorhabditis elegans Serpentine re...    29   3.5  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    28   4.7  
AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine re...    28   4.7  
U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine r...    27   8.2  
AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine...    27   8.2  

>Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical
           protein F32A11.6 protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 134 AYNCKNSN-RQVTDPVGAYSRRTTKFKTRLCXKYS 33
           A NC+ ++  +   P    SR+  K+KT+LC KY+
Sbjct: 148 AENCRFAHGEEELRPAKLESRQNNKYKTKLCDKYT 182


>AF068717-2|AAC17763.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein248 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 295 CYMNILYFADRRHLIRMSCVISFVFVYMCCF 387
           CY    Y+A    LIR+S VI+F  V +C F
Sbjct: 3   CYNANSYYASPEFLIRVSNVITFFEVPLCIF 33


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 243 IFLRHLCTF---VXLFLVIHLLYEYFVFC 320
           IFL   C F   + L LV+H +Y Y V C
Sbjct: 87  IFLIDFCAFYFTLILLLVVHFIYRYVVVC 115


>AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 64 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 446 YFQIKLSYMLKIHPM**SVMKQHMYTNTNDITHDILIKCLRSAKYKIFI*QMYY 285
           YF I  SY  K   M   ++  HM  NT++ T D+  K +R   ++I++  + Y
Sbjct: 200 YFPIIGSYW-KYQAM--KLLTPHMSPNTSETTRDMFRKLIRGLNFQIYLPLLTY 250


>U28735-8|AAF99957.2|  434|Caenorhabditis elegans Acetylcholine
           receptor protein 22 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 471 WQFYFSFLEVLF*IIYXVLNIYIHLY 548
           WQ +FS+ +++F I + V+N  +  Y
Sbjct: 402 WQRFFSWTDIIFSIFFFVVNCLVTFY 427


>AY519852-1|AAR89633.1|  434|Caenorhabditis elegans acetylcholine
           receptor (51.1 kD)(acr-22) protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 471 WQFYFSFLEVLF*IIYXVLNIYIHLY 548
           WQ +FS+ +++F I + V+N  +  Y
Sbjct: 402 WQRFFSWTDIIFSIFFFVVNCLVTFY 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,680,629
Number of Sequences: 27780
Number of extensions: 246319
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)