Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32362
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 30 0.28
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.66
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.1
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.0
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 27 2.6
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 3.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 6.1
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 6.1
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 26 6.1
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 8.1
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 8.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 8.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.1
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = +3
Query: 330 NDNLYCLNLNSELTLISNPDKEKMDFWEKI-------------YDKHYRIWDETTNQSKN 470
N +L ++L S+L I P+K + + WE YD +++ T+ S
Sbjct: 204 NLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFSLE 263
Query: 471 EPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNE 581
E + D + PE YQNE I+ + ++KN+
Sbjct: 264 EIEKDLGRSLPEYPAYQNEEGINALRNVLVAFSWKNQ 300
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 454 PTSLKTNHKSIHSKKNQKSIHTKMNQKSIHA 546
P K +H S S ++ KS+ T NQK IH+
Sbjct: 856 PMKKKLSHSSASSTRSIKSLLTNANQKHIHS 886
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.3 bits (60), Expect = 1.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +3
Query: 348 LNLNSELTLISNPDKEKMDFWEKIYDKHYRIWDETT---NQSKNEPQIDTF----KKEPE 506
LN +SE I+ +K+ D H ++TT + NE ++D KKE E
Sbjct: 43 LNDDSEAAKITTNEKQSSPV-----DSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDE 97
Query: 507 IDTYQNEPEIDTCKKETEIDTYKNEPEID 593
+ +NE E D ++E E + E E D
Sbjct: 98 DNVEENEEEADANEEEEEDEEDDEEDEED 126
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 460 SLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNR 612
S +T SI S Q +I + HA+ + HT+ Q+SI ++ R
Sbjct: 718 SRQTTSSSIDSNNVQSNIEFLKGLNATHARSTSQVSHTQRLQQSISTSLER 768
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 444 DETTNQSKNEPQIDTFKK-EPEIDTYQNEPEIDTCKKETEIDTYKN-EPEIDTPK 602
D + + E QID + + N+ E+DT E E T+K+ E ++ +PK
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQMEGNDKELDTDNNEDESTTFKDEEDDLISPK 150
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/80 (20%), Positives = 37/80 (46%)
Frame = +1
Query: 457 TSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNRK*CPLSRQ 636
TS K +++ +K + + + N + +KK+ + + ++ I N+ +S
Sbjct: 139 TSQKVEIETVETKPGEPEVKQETN---LQKEKKESKVKLESKEEKISRNLRSSSRSISPV 195
Query: 637 WS*PKS*TKRPAFPKRGQKS 696
P+S +P P++ +KS
Sbjct: 196 TEQPQSPKIQPVIPEKKEKS 215
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +1
Query: 379 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQ 558
++R ++ ++ +++ + +K P + K + +K++K K+N+ S+H K
Sbjct: 933 RSRGDKKVVDNKRDASDSEDLAIKNPMNKKAKVGKVDFRKHEK----KLNKASMHRDKFS 988
Query: 559 KSIHT 573
+HT
Sbjct: 989 TGMHT 993
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 240 IVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYCLNLNSELTLI 377
+V+ W N A SGN + D W+ + LY L+S + +I
Sbjct: 1760 LVKTWWNEAASGNNLADLIIQHLARWISSSKSYLYSPLLSSHVEVI 1805
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 451 RPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNRK 615
R TS K + K SKK ++ K K + K HT+ ++ +R ++K
Sbjct: 131 RKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 436 ESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQK-SIHAKKKQKSIHTKMNQKSIRPN 603
ES RP + + I QK + + +K S H K Q + N+ + PN
Sbjct: 226 ESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPN 282
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 369 TLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPE-IDTYQNEPEIDTC 545
T+ S+P K +W Y+K I T + K ++ +PE + + ++ +
Sbjct: 146 TINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSA 205
Query: 546 KKETEIDTYKNEPE 587
K T+ ++ +P+
Sbjct: 206 IKATKAFSHLTQPK 219
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 435 RIW-DETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNEPEI 590
+ W D N++K I +DTY N+ E D KK I T N+ ++
Sbjct: 12 KYWKDVVQNKNKFLKNIGIISGPKLVDTYSNQFEADFLKKCVLIPTSYNKEDL 64
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 222 IKMRERIVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYC 347
IK E I+R TN +K P +N YLN L + +L C
Sbjct: 247 IKYLEHILRTNTNGSKIFTKSPVKNLYLNWPQLVLDYGSLLC 288
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 171 YLFKNDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHYLNTNWL 320
YLF+ +++K + RE++ W +AK P P + WL
Sbjct: 101 YLFE-EYKKQQGTNKSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWL 149
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 105 ISPRRSSLVLD*STLCTWDELGYLFKNDFQKDVEPTPEDIKMRERIVRL 251
I+P LD TL DEL Y+ K QKD E ++I++R + L
Sbjct: 662 INPSTKLEDLDEHTLS--DELTYITKKFVQKDQEYQTKEIELRNYKITL 708
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 576 FCMYRFLFLFCMYRFLVHFGM 514
FC+ F FLF ++ F +HF +
Sbjct: 288 FCLIFFPFLFFLFWFYMHFNI 308
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 423 DKHYRIWDETTNQSKN 470
DK RIWD T+N+ K+
Sbjct: 242 DKTIRIWDSTSNKKKS 257
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 658 FMTWVMTTVSITDTISGSCLGVSISGSFLYVSISVSFL 545
+ W+M V+I D + +C G+ L+ + + FL
Sbjct: 71 YYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMGIKFL 108
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 411 EKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCKK---ETEID 566
E +Y Y +W + ++QSK + + +++ E D + + +T K ET +D
Sbjct: 1094 ENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTDIKFFSETTLD 1148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,155
Number of Sequences: 5004
Number of extensions: 68075
Number of successful extensions: 310
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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