Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32362
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 32 0.39
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 31 0.90
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 31 0.90
06_01_0046 + 425064-425296,426278-426327,426607-426696,426778-42... 31 1.2
08_02_1242 - 25513665-25513997,25514184-25514257,25514317-255144... 30 1.6
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 30 1.6
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 30 2.1
03_02_0887 - 12188178-12188224,12188464-12188692 30 2.1
02_04_0492 - 23424745-23425890 30 2.1
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 3.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 3.6
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 29 4.8
05_03_0408 + 13601576-13601748,13601795-13602104,13602597-136028... 29 4.8
01_06_0535 + 30061862-30063388 29 4.8
09_03_0169 - 13010909-13012033 28 6.4
07_03_0250 - 15822602-15822650,15822744-15822814,15822908-158230... 28 8.4
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 471 EPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNEPE 587
+PQ T+ +P+ +TYQ +P+ +T + ++ Y +P+
Sbjct: 235 QPQGQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQ 273
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +3
Query: 471 EPQIDTFKKEPEIDTYQNEPEIDTCKKETEIDTYKNEPE 587
+PQ +T++ +P+ +TY +P++ + + Y +P+
Sbjct: 244 QPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQ 282
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 409 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 588
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLANTKKKQEEGKIKRNKK 72
Query: 589 S 591
+
Sbjct: 73 A 73
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 433 TESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNR 612
++S M+ +++ + S KK K+ T + IH K+ Q +TK Q+ + N+
Sbjct: 14 SKSQMEGESTMSESKSSSRGKKKSKT--TSEQKVEIHTKETQNLANTKKKQEEGKIKRNK 71
Query: 613 K 615
K
Sbjct: 72 K 72
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 363 ELTLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDT 542
E T + PD++ + + D D+ T + N+P D +EP+ T N+P D
Sbjct: 1124 EDTTVEAPDEKTKTANDPVEDATVEEPDKKT--AANDPVEDATVEEPDKKTAANDPVEDA 1181
Query: 543 CKKETEIDTYKNEPEID 593
+E + T N+P D
Sbjct: 1182 TVEEPDKKTAANDPAED 1198
>06_01_0046 +
425064-425296,426278-426327,426607-426696,426778-426840,
427524-427583,428135-428194,428654-428713,429273-429347,
429559-429602
Length = 244
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 409 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQ 585
G KS ES M S K + QK IHTK Q +A++KQ+ K N+
Sbjct: 13 GSKSQMEEGESIMSESKSSSRGKKKSKTTSEQKVEIHTKETQHLENAEEKQEEGKIKRNK 72
Query: 586 KS 591
K+
Sbjct: 73 KA 74
>08_02_1242 -
25513665-25513997,25514184-25514257,25514317-25514422,
25514507-25514557,25514629-25514700,25514785-25514924,
25515109-25515162,25515328-25515435,25515652-25515747,
25515828-25515887,25516234-25516293,25517581-25517809
Length = 460
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 409 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 588
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72
Query: 589 S 591
+
Sbjct: 73 A 73
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +1
Query: 403 TFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMN 582
++G S NTT + M +PTS + N + ++ + ++T MN ++ + S++ N
Sbjct: 266 SYGAISAQNTTNANMMQPTS-QLNIMNANTMQPTSQLNT-MNANTMQPTSQLSSLNPNQN 323
Query: 583 QKSIRP 600
Q+ P
Sbjct: 324 QRFAAP 329
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 294 NHYLNTNWLPVTNDNLYCLNLNSELTLISNPDKEKMDFWEKIYD 425
N Y+N +++ VT DN ++++ L D DFWE +Y+
Sbjct: 114 NDYINASFIKVTEDNRVAKFISTQGPLAKTFD----DFWEMVYE 153
>03_02_0887 - 12188178-12188224,12188464-12188692
Length = 91
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 436 ESGMKRPTSLKTNHKSIHSKKNQK-SIHTKMNQKSIHAKKKQKSIHTKMNQKS 591
ES M S K + QK IHTK Q + KKKQ+ K N+K+
Sbjct: 21 ESTMSESKSSSIGKKKSKTTSEQKVEIHTKETQNLENTKKKQEEGKIKRNKKA 73
>02_04_0492 - 23424745-23425890
Length = 381
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 489 MYRFVVRF*TGWSFHPRFCSVCRRF----SPKSPSSLCP 385
M V+ + GWS HP F S CR + SP P+ + P
Sbjct: 22 MLVLVLEYRLGWSTHPSFASTCRHWRSAVSPFYPAWITP 60
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 409 GRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQK 588
G KS + + +S + KS + + + IHTK Q + KKKQ+ K N+K
Sbjct: 13 GSKSQMEGESTMSESKSSSRGKKKSKTTFEQKVEIHTKETQNLENTKKKQEEGKIKRNKK 72
Query: 589 S 591
+
Sbjct: 73 A 73
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +1
Query: 418 STTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKS 591
S+ +T+ S R K++ K H KS H K +KS K+K K + + S
Sbjct: 206 SSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTKRKSRGTKRKSKRSYRSSSDDS 263
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 485 IDLWFVFRLVGRFIPDSVVFVV 420
I LWFVF L+ FI +VVF++
Sbjct: 714 IALWFVFSLIIAFIAGTVVFIM 735
>05_03_0408 +
13601576-13601748,13601795-13602104,13602597-13602834,
13603014-13603364,13603457-13603542,13603685-13603759,
13604241-13604542,13605359-13605622,13606032-13606806
Length = 857
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3
Query: 288 DENHYLNTNWLPVTNDNLYCLNLNSEL-TLISNPDKEKMDFWEKIYD-KHYRIWDETTNQ 461
D ++NT++LP L EL +L N E+ D WE+IYD +Y N
Sbjct: 154 DRVFFINTSYLPDKTPEALRLLREEELRSLRGNGRGERKD-WERIYDFDYYNDLGNPDND 212
Query: 462 SKNEPQIDTFKKEP 503
P + K P
Sbjct: 213 DHVRPVLGGTKTHP 226
>01_06_0535 + 30061862-30063388
Length = 508
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = -2
Query: 616 ISGSCLGVS--ISGSFLYVSISVSFLHVSISGSFWY 515
++ C+ ++ ++GSF+ ++I S L+ ++S FWY
Sbjct: 346 LASICMEIAAVLNGSFMGLNIVASILNSNLSAQFWY 381
>09_03_0169 - 13010909-13012033
Length = 374
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 456 WSFHPRFCSVCRRFSPKSPSSLCP 385
WS HP VCR + +S +SLCP
Sbjct: 27 WSSHPSVALVCRHW--RSAASLCP 48
>07_03_0250 -
15822602-15822650,15822744-15822814,15822908-15823006,
15823235-15823309,15823808-15823885,15823990-15824098,
15824167-15824216,15824310-15824411,15824994-15825071,
15825419-15825685,15825863-15825962,15826137-15826315
Length = 418
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 258 NFAKSGNPIPDENHYLNTNWLPVTNDNLYCLN 353
NF+KSG + E +++N+ P T + LY +N
Sbjct: 186 NFSKSGRDLFIEIQKIDSNYYPETLNQLYIIN 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,811
Number of Sequences: 37544
Number of extensions: 390238
Number of successful extensions: 1240
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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