Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32359
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    56   3e-09
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.33 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   5.4  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   5.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.2  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   7.2  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
 Frame = +1

Query: 199 GQLQGRIVNSPSGKA-FYSFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ 372
           G L G  V   +GK   + F GI YAKPP+G LR++ P + E  +D   D      +C Q
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 373 ------IDPVFAKSYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWGS 507
                  + V    +  DE+CLFLN++ P+ +      PV+ +IHGG  + G+
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGN 114


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 265 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 384
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 463 PVMIWIHGGGFKWGSGNT 516
           P  +W HGGG+  G+ NT
Sbjct: 101 PCFLWFHGGGWVLGNINT 118


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 341 MPRRKGTCVLKSIQSSRNPMSAMKTAC 421
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 322 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 426
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/35 (25%), Positives = 24/35 (68%)
 Frame = +1

Query: 46  IKHLCNELNKILINNSGVNNEFPTMISAVNEFLDD 150
           I +LC+ + ++ +++S +N+++  ++S  N  L+D
Sbjct: 240 IAYLCSLVEELKLHSSIMNDKYVCLVSKHNNALED 274


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 459 ECSISARGVH-V*EQAVFIADIGFREDWIDLSTHVPF 352
           EC  S  GV  + +   FI+  GF E W      +PF
Sbjct: 137 ECQFSEGGVFALLQNDTFISITGFEEPWRKTYASIPF 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,799
Number of Sequences: 5004
Number of extensions: 58596
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)