Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32357
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   1.7  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    26   4.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.2  

>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 158 PKIVSFIPF---PCQ-YLSAARL*QLCQWEEITVTSKLEFFEKAIGLIFTTT 301
           P I+++IP     C  YL    L +   W+ I +T+K+E+F     ++FT T
Sbjct: 513 PGIIAYIPVWTVGCLIYLLGIELLKESLWDPIGITTKIEYF-TICAIVFTMT 563


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 605 YHRPACFCREAVMHLGLRGGAAVVTILI 522
           + +P+ F  E V+ L L GG AVV + +
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDVTL 114


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 495  WRIYVVDVYGLQ*PLNTRWAVRSSTHLGTSNRFSFAKCR 379
            W I +   Y    P  TR+ +  ST  G S   SF   R
Sbjct: 1217 WCISLTSAYPFLVPFETRYLLLQSTAFGLSRSVSFLLSR 1255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,893
Number of Sequences: 5004
Number of extensions: 52178
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)