Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32357
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0053 + 8602142-8603581                                           29   3.1  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     29   4.1  
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    29   4.1  
02_05_0741 + 31408615-31409130                                         28   7.2  

>10_05_0053 + 8602142-8603581
          Length = 479

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 603 PPPRLFLP*SSNASRFEGGG 544
           PPP  F+P  S +SRF GGG
Sbjct: 134 PPPPRFIPLPSYSSRFAGGG 153


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 65  HSKIHKFYKIRVDLLK*MLFKLCIKLNK 148
           H+   KF+ +   +LK M F+ C++L+K
Sbjct: 409 HAAFAKFFVLNASVLKVMTFRACVRLSK 436


>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 228 WHNCYSRAADRYWHGNGIN 172
           +H+ Y R +DR WHGN ++
Sbjct: 364 FHSTYGRNSDRKWHGNHLD 382


>02_05_0741 + 31408615-31409130
          Length = 171

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 520 GISIVTTAAPPLKPRCITASR-QKQAGRWYLPVRTHKRSYH 639
           G+S      PPL+PRC    R Q+Q  R   P+    RS H
Sbjct: 74  GLSSSVQILPPLRPRCTRIRRWQRQERRILRPLLLPCRSRH 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,901
Number of Sequences: 37544
Number of extensions: 345016
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)