Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32352
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    29   0.037
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    29   0.037
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 566 GPVQSIIKFDTLEEVIDRANNTNYGLAAGIFTTNFNNALQ-FSKHVEAGTVWVNNYLTMA 390
           G + +I+ F   E+++D     N      +F  NFN+ ++  S + +     +  ++ ++
Sbjct: 500 GSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGFFILIS 559

Query: 389 HQAPFGGF 366
             A FG F
Sbjct: 560 QDAKFGNF 567


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 0.037
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 566 GPVQSIIKFDTLEEVIDRANNTNYGLAAGIFTTNFNNALQ-FSKHVEAGTVWVNNYLTMA 390
           G + +I+ F   E+++D     N      +F  NFN+ ++  S + +     +  ++ ++
Sbjct: 500 GSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSISNNEQVKVSALGFFILIS 559

Query: 389 HQAPFGGF 366
             A FG F
Sbjct: 560 QDAKFGNF 567


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 553 LWTGPKISSLAI 588
           LWTG +ISSL I
Sbjct: 46  LWTGKQISSLII 57


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 41  DIKIETLFYTHTTIRYFLHCNIKRQKLSRAKGKLHWN 151
           D + E  +Y H  I    +C     +L R K  ++W+
Sbjct: 228 DRRGELFYYMHQQIMARYNCERLCNRLGRVKRFINWH 264


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 303 LLFQICFNCFDTIF 344
           ++F +CF CF+ ++
Sbjct: 410 IVFPVCFVCFNLMY 423


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 303 LLFQICFNCFDTIF 344
           ++F +CF CF+ ++
Sbjct: 410 IVFPVCFVCFNLMY 423


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +3

Query: 303 LLFQICFNCFDTIF 344
           ++F +CF CF+ ++
Sbjct: 348 IVFPVCFVCFNLMY 361


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 620 TVFADVNDDMTIAKEEIFGPVQSIIKFD-TLE 528
           T   D   + +IAK E  G  Q I  FD TLE
Sbjct: 159 TTLLDALRNTSIAKSEFGGITQCIGAFDVTLE 190


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 575 EIFGPVQSIIKFDTLEEVIDRANNTNYGLAAGIFTTNFN 459
           E F  V S  +   LE  +DR +N  Y         +FN
Sbjct: 192 ETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFN 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,722
Number of Sequences: 438
Number of extensions: 3847
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)