Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32349
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    31   0.076
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   1.2  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 505 VFRASPRQXDVMIVAGTLTNKMAPALRK 422
           VFRA+P Q  VM+ + TL+N++ P  +K
Sbjct: 222 VFRATPPQKQVMMFSATLSNEIRPICKK 249


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 423 KCTTKCLILDGLFQWVVVLMEVAITTIHTLS*EDAIVLYQLTYMYP-DVHLQLKLYYMVY 247
           K T  CLIL  LF W++VL+  A +     + +  +  Y+L+ +Y   + +  +  ++VY
Sbjct: 87  KTTVVCLILFLLF-WIIVLISCADSKALPKNADSILKAYRLSVLYVWAIDIVFETIFIVY 145


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 154 C*LHICC*LISV***IIRYTHSTSIKSFFIVVVLVVF 44
           C L+I C +I +    I YT    ++ +FI+  LV F
Sbjct: 354 CCLNIVCMVIHI---TIHYTGKEFVQPYFIIYTLVFF 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,652
Number of Sequences: 5004
Number of extensions: 40092
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)