Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32349
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 88  TSIKSFFIVVVLVVFTEYNM 29
           +S+ SF+I  +++VF  YN+
Sbjct: 347 SSLSSFYIPCIIMVFLYYNI 366


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 YQLTYMYPDVHLQLKLYYM 253
           Y+L Y   DV L    YYM
Sbjct: 219 YKLDYFMEDVELNAYYYYM 237


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 309 YQLTYMYPDVHLQLKLYYM 253
           Y+L Y   DV L    YYM
Sbjct: 219 YKLDYFMEDVELNAYYYYM 237


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 473 NDCSRNFNKQNGS 435
           ND  +N NKQNG+
Sbjct: 461 NDNRQNDNKQNGN 473


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 451 TNKMAPALRKVY 416
           T+KMAP +RK++
Sbjct: 329 THKMAPWVRKIF 340



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 405 LILDGLFQWVVVLMEVAITTI 343
           ++LD LF W+  +  +  T I
Sbjct: 483 MVLDRLFLWIFTIASIVGTFI 503


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 286 RVHICQLVQYDRILLRQSMN 345
           RVH+  + QY+ IL+ + ++
Sbjct: 657 RVHVTNMDQYNSILMIEHLS 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,239
Number of Sequences: 438
Number of extensions: 3056
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)