Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32347
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    28   0.93 
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    25   6.6  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 460 NEGCQYLGVVNXLDDQHGEGRLVPGQXLRRRILDLHDHGGIF 335
           N GC +  VV  ++DQH        Q  RR+I+D+  H  ++
Sbjct: 103 NSGC-WESVVEFIEDQHESYMRQDQQPDRRKIIDMRIHACLY 143


>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 383 LTWYKPPLTVLVIKXVHDAQILAPFVQLVHWL 478
           L W KPP  +L++K   D ++   F  LV  L
Sbjct: 57  LQWPKPPKNILILKKRMDERVDHCFETLVQHL 88


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 388 GQXLRRRILDLHDHGGIFH 332
           G  LRR +LDL++ G +F+
Sbjct: 311 GDILRRILLDLYEQGALFN 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,665
Number of Sequences: 5004
Number of extensions: 34410
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)