Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32347
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0612 - 4429605-4431152                                           28   5.0  
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735     28   5.0  

>06_01_0612 - 4429605-4431152
          Length = 515

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 418 DQHGEGRLVPGQXLRRRILDLHDHGGIFHNPAAWSKLL 305
           D  G+G++V G   +RR+L  H   G F   A W+ +L
Sbjct: 358 DAGGDGKIVRGWVPQRRVLS-HPAVGAFVTHAGWNSVL 394


>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
          Length = 738

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 397 ASPHRAGHQEXSRRPDTGTLRSASTLARSCELATY 501
           ASP   G     R PD GTL +AS   ++ E+ ++
Sbjct: 654 ASPSEGGGAGEPREPDGGTLSAASIRKKAIEVGSH 688


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,562
Number of Sequences: 37544
Number of extensions: 247594
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)