Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32347
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-4|ABD94109.1|  244|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>U29614-4|ABD94109.1|  244|Caenorhabditis elegans Hypothetical
           protein F18E9.8 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 369 GSWICMTMAEFFIILPHGPNCCIGDGAF 286
           G+WIC ++   +++L    +CCIG G+F
Sbjct: 117 GAWICESIKYLWVVLYDVVSCCIG-GSF 143


>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +1

Query: 112 MRLMIIQVINIMTITCILM 168
           +RL+++ +I +MTITCILM
Sbjct: 289 IRLLVLFLILVMTITCILM 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,368
Number of Sequences: 27780
Number of extensions: 203911
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)