Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32346
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.4  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    25   9.9  

>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 256 SRSGNPWTLLNGKDGASRALPPARALDG 173
           +R G P   LN +D A   LPP+ A DG
Sbjct: 132 NRIGKPCLTLNFQDIADEKLPPSSAEDG 159


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 NFPKITRYYAATGTSLT 156
           NFP+ TRY+ + G  +T
Sbjct: 163 NFPRTTRYFTSQGLQIT 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,982
Number of Sequences: 5004
Number of extensions: 45171
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)