Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32344
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    29   0.73 
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   1.7  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.7  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        27   1.7  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   2.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.0  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 382 SLNYGYDSQKSRKKSIKYKGGVCFLNFQIKFF 287
           SLNY YD+ K+ +KS  Y+  +C L  QI+ +
Sbjct: 313 SLNYPYDNPKADQKS-SYQTKLCILPNQIQIY 343


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 335 NRFFPRFLRVVAI--IQTTLWFNIAFLLTLYRVVK 433
           N+FFPRF+R  +I  I+T   F +  L ++ +V +
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTR 116


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 335 NRFFPRFLRVVAI--IQTTLWFNIAFLLTLYRVVK 433
           N+FFPRF+R  +I  I+T   F +  L ++ +V +
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTR 116


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 335 NRFFPRFLRVVAI--IQTTLWFNIAFLLTLYRVVK 433
           N+FFPRF+R  +I  I+T   F +  L ++ +V +
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTR 116


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 335 NRFFPRFLRVVAI--IQTTLWFNIAFLLTLYRVVK 433
           N+FFPRF+R  +I  I+T   F +  L ++ +V +
Sbjct: 82  NKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTR 116


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 263  NNIEFSYLKEFYLKV*KTNSAFIFNRFFPRFLRVVAIIQTTL 388
            + +E +YL  F+  +   ++ F+F+ F P   +V AII   L
Sbjct: 1450 DGVEMNYLYAFHFSI---SNRFVFSLFMPHLKKVEAIIYDKL 1488


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +1

Query: 238 ILYGQANMEQYRVFLLKRILFESLKNKLRLYI**IFSAIFASRSHNSNYFMV*YRVFIDT 417
           +LYG AN+   RV L  +++   L NKLR  I  + S     R  NS+ +    +V+   
Sbjct: 199 LLYG-ANLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVY--- 254

Query: 418 ISSGERIFGLSDI 456
             SG+  F L +I
Sbjct: 255 --SGQTSFSLEEI 265


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 474 MLRIKQNIA*TKYPFTTRYSVNKNAILNHKVV*IMATTRKNRGKNLLNIKAE 319
           +L +K N +      T R  + +NA+L+HKV+ +    +     N LN + E
Sbjct: 391 LLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDLETLNQLNTEIE 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,165
Number of Sequences: 5004
Number of extensions: 43630
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)