Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32340
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  MHCEMASVLISDLYGRVFSAKDIGYAFE 164
           +H +    +I DL+ R+ +A D+GY  +
Sbjct: 317 LHMQKYVQMIHDLHTRISTAIDLGYVVD 344


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  MHCEMASVLISDLYGRVFSAKDIGYAFE 164
           +H +    +I DL+ R+ +A D+GY  +
Sbjct: 317 LHMQKYVQMIHDLHTRISTAIDLGYVVD 344


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 490 QRIASASSPDVRYSFSSNWI*RIRDLTGLIPPPTPHMLSSLTSPCFIDSRVSAL 329
           +++AS   P    S + + I ++   T L+  P P+   S  SP  + + VSA+
Sbjct: 348 KQMASPEPPKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSALVSAV 401


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 47  DNCGDSVGSQGDALRNGLGPHIRFVWKSFFSQRH 148
           ++CG ++    D  R GL  +  F   SF  Q H
Sbjct: 318 EDCGSAIAYVSDVFRYGLLIYDFFKDSSFRIQHH 351


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 102  PRPFRSASPCDPTLSPQ 52
            P PF + +P  PT+ P+
Sbjct: 1171 PSPFMAGAPNVPTILPE 1187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,359
Number of Sequences: 438
Number of extensions: 1546
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)