Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32339
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    67   1e-12
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   1.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   5.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   6.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.7  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    24   8.9  
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce...    24   8.9  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    24   8.9  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 67.3 bits (157), Expect = 1e-12
 Identities = 26/66 (39%), Positives = 44/66 (66%)
 Frame = +3

Query: 204 SKDKLTKEDMDFLKTHTSYDETTIKEWYKGFKQDCPNGRLTPAKFVDMYKMFFPSGNAVE 383
           S+ KL+++ +  L   T +D+  +++WYKGF +DCP+G L  ++F  +YK FFP G+   
Sbjct: 4   SQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA 63

Query: 384 FCDHVF 401
           F ++VF
Sbjct: 64  FAEYVF 69



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 400 FRTFDMDKNGYI 435
           F  FD DKNGYI
Sbjct: 69  FNVFDADKNGYI 80


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = -1

Query: 350 VHVDELSRCQPAVRAVLFKALVPLLDGGLIIGSVSLKEVHVFFGKFV---FTNEATHFEI 180
           +H+D+L    P  R  + + L   ++G +  GS+    VH    +F+    +NEA     
Sbjct: 286 IHIDKLLIDHPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHRAMLEFINHADSNEAKELLN 345

Query: 179 *VSLLEIDQMNTLDEARTALR 117
               L  + ++T D ++ A++
Sbjct: 346 LTKELIYEFVHTRDGSQVAMK 366


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 302  LFKALVPLLDGGLIIGSVSLKEVHVFFGKFVFTNEATHF 186
            L   +VPLL G L +     K  HV F  F  + +  HF
Sbjct: 1073 LSSLIVPLLTGVLAVYIFKKKFYHVKFNAFGTSKQNLHF 1111


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 237 FLKTHTSYDETTIKEWYK 290
           +LK H+  DETT K +Y+
Sbjct: 474 YLKNHSILDETTRKSFYR 491


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 269 GLIIGSVSLKEVHVFFGKFVFTNE 198
           G++     +K VH F+G F   N+
Sbjct: 242 GIVHADAPIKSVHHFYGTFTLNNQ 265


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -1

Query: 437 SMYPFLSMSNVRKDVVTELHSVPRWEEHLVHVDELSRCQPAVRAVLFKALVPLLDGGLI 261
           S+YPF S  N+R     E + +P   E+L  V E+      V    F + +  LDG +I
Sbjct: 42  SLYPFESNINIRNIKNEESYDIP--NEYL--VGEIFPTNSKVIVESFSSPLKKLDGTMI 96


>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 90

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 12  RRPCCTVHAPLTFVSLARSCPPSLIDNTTHAPVSAPEGR 128
           R+P C  +  + F+S A    P+L  N + A  SA E R
Sbjct: 7   RKPACISYRGIRFMSKASDTDPTLA-NASSAKRSAFESR 44


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 177 LDFKMGCFVSKDKLTKEDMDFLKTHTSYDETTIKEW--YKGFKQD 305
           LD       SK +L  ++M+  +   SY+   +K W  Y G K +
Sbjct: 112 LDHYRAIISSKRELRAQEMEAKRKQDSYNNPELKFWEDYLGLKME 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,572
Number of Sequences: 5004
Number of extensions: 34127
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)