Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32339
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0609 + 24312528-24313352                                         29   2.2  
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337     27   5.0  
03_02_0736 + 10818544-10818681,10818810-10818865,10818956-108190...    27   5.0  
03_01_0348 + 2739523-2741006,2742046-2742232                           27   6.6  
11_03_0077 + 9657875-9658017,9658702-9658819,9659824-9659914,966...    27   8.7  
11_03_0075 + 9649588-9649834,9649906-9649927,9651360-9651483,965...    27   8.7  
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886...    27   8.7  
08_01_0857 + 8411305-8411349,8412919-8413009,8413196-8413285,841...    27   8.7  
01_07_0042 + 40697153-40697407,40697479-40698081                       27   8.7  

>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 51  VSLARSCPPSLIDNTTHAPVSAPEGRTSLI*RIHLIDLEQRNL 179
           VSL  S   S +D +T+  V A     SL+  +  +DL+Q NL
Sbjct: 141 VSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNL 183


>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
          Length = 516

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 THTSYDETTIKEWYKGFKQDCP 311
           T+ +YD  +I+EW+    Q CP
Sbjct: 153 TNMTYDRRSIQEWFSAGNQICP 174


>03_02_0736 +
           10818544-10818681,10818810-10818865,10818956-10819050,
           10819172-10819203,10819327-10819360,10819463-10819674
          Length = 188

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 121 SGALTGACVVLSIRLGGHDRARETNVSGA 35
           +GALTGA V L+     H+R  +  ++GA
Sbjct: 147 AGALTGAAVALTSDRASHERVVQCAIAGA 175


>03_01_0348 + 2739523-2741006,2742046-2742232
          Length = 556

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 199 SLVKTNLPKKTWTSLRLTLPMMRPPSRSGTRALNKTART 315
           SL+  +L K      R  LP++RPP R   R L   ART
Sbjct: 7   SLLLASLSKPFLRRNREPLPLLRPPPRPLPRVLPFAART 45


>11_03_0077 +
           9657875-9658017,9658702-9658819,9659824-9659914,
           9660055-9660144,9660236-9660336,9660752-9660892
          Length = 227

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 312 NGRLTPAKFVDMYKMFFPSGNAVEFCDHVFPHIRHG 419
           N  +TP + V  Y       N ++F   +FP + HG
Sbjct: 160 NDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHG 195


>11_03_0075 +
           9649588-9649834,9649906-9649927,9651360-9651483,
           9651827-9651917,9652047-9652160,9652288-9652388,
           9652857-9652997
          Length = 279

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 312 NGRLTPAKFVDMYKMFFPSGNAVEFCDHVFPHIRHG 419
           N  +TP   VD +         V++   +FP + HG
Sbjct: 212 NDHITPPSLVDQFVNVLRQTTEVDYFVRIFPDVSHG 247


>08_02_0095 -
           12285976-12286037,12286111-12287229,12287494-12288604,
           12288695-12288757,12288851-12288913,12289268-12289318,
           12289538-12289617,12290078-12290164,12290349-12290435,
           12290889-12290975,12292106-12292308,12292756-12292922
          Length = 1059

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 412 RMCGKTWSQNSTAFPDGKNILYMSTNLAGV 323
           ++C K+ SQ    F +GKN+   ST L+ +
Sbjct: 108 KICSKSESQLQRKFKEGKNVFGESTQLSNM 137


>08_01_0857 +
           8411305-8411349,8412919-8413009,8413196-8413285,
           8413377-8413477,8413894-8414034
          Length = 155

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 312 NGRLTPAKFVDMYKMFFPSGNAVEFCDHVFPHIRHG 419
           N  +TP + V  Y       N ++F   +FP + HG
Sbjct: 88  NDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHG 123


>01_07_0042 + 40697153-40697407,40697479-40698081
          Length = 285

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 338 ELSRCQPAVRAVLFKALVPLLDGGLIIGSVSLK 240
           ELS CQP +R VL + +  LL  G++  ++ +K
Sbjct: 255 ELSPCQPGLRQVLHRKV--LLHSGILRATIVIK 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,832,914
Number of Sequences: 37544
Number of extensions: 250908
Number of successful extensions: 728
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)