Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32339
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.48 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   1.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   2.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   2.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 393 GHRTPQRSQMGRTSCTCRRT*PVSACRSGSLV*SP 289
           G   P  +QMGR S T       S   SGSL  SP
Sbjct: 211 GRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASP 245


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 430 THSCPCRMCGKTWSQ 386
           T  C C +CGK +S+
Sbjct: 40  TLPCKCHLCGKAFSR 54


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 116 CAHGCVCRV 90
           CA GCVCR+
Sbjct: 67  CAPGCVCRL 75


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 116 CAHGCVCRV 90
           CA GCVCR+
Sbjct: 67  CAPGCVCRL 75


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = +3

Query: 150 HLIDLEQRNLDFKMGCFVSK 209
           H+ID++++N      C+V++
Sbjct: 41  HIIDVDEKNQILTTNCWVTQ 60


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 290 LVPLLDGGLIIG---SVSLKEVHVFFG 219
           LV     GL+ G   +V  KEVHVF+G
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYG 64


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 355 ILYMSTNLAGVSLP 314
           + YMST +AGV  P
Sbjct: 833 VSYMSTTMAGVIYP 846


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -1

Query: 290 LVPLLDGGLIIG---SVSLKEVHVFFG 219
           LV     GL+ G   +V  KEVHVF+G
Sbjct: 38  LVVETTSGLVRGFPRTVLDKEVHVFYG 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,264
Number of Sequences: 438
Number of extensions: 2506
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)