Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32336
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    33   0.043
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    30   0.30 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    28   1.2  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    28   1.2  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    28   1.2  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   1.6  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   2.1  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   3.7  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   3.7  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   6.5  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    25   6.5  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   8.7  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   8.7  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   8.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   8.7  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   8.7  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 376 VGTVHCFGSMIGQLVQGQLSDRFGRKTAAVFA 471
           +G +   G+++GQL  G  SDRFGRK   + A
Sbjct: 120 IGMIAYVGTIVGQLSFGWYSDRFGRKNGMITA 151


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 373 LVGTVHCFGSMIGQLVQGQLSDRFGRKTAAVFAGTMGAVL 492
           L  T++  G M+G L+   LS+ +GR+   +F  T+ A++
Sbjct: 79  LGATLYVIGVMLGPLIFSPLSELYGRRPLNIFGYTLFALM 118


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 373 LVGTVHCFGSMIGQLVQGQLSDRFGRKTAAVFAGTMGAVLVSARVSPLPS 522
           L G V+  GS+ G ++   ++DRFG++ + +    +  + +  +V+ +PS
Sbjct: 65  LTGMVNV-GSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPS 113


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +1

Query: 361 WKQTLV-GTVHCFGSMIGQLVQGQLSDRFGRKTAAVFAGTMGAVLVSARVSPLPSGST*F 537
           W+Q L+ GT++  G + G ++    ++R G+K +  F   +  +     V+ +PS     
Sbjct: 56  WRQALLTGTINA-GCLFGAMLSSPFTERIGKKYSICFFSGVYIIAELLLVTAVPSWIQVL 114

Query: 538 LEGLEAAIG----DALSPMFMFE 594
           +  + A +G      LSP +  E
Sbjct: 115 VGKILAGVGIGALSVLSPGYQSE 137


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 364 KQTLVGTVHCFGSMIGQLVQGQLSDRFGRKTAAVFAGTMGAVLVSARVSPLPS 522
           +Q L+  +   GSM G ++   L DR G++ + +F   +  + +  +V+ +PS
Sbjct: 57  RQGLITGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQVTAVPS 109


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 331 IAEFNLACEDWKQTLVGTVHCFGSMIGQLVQGQLSDRFGRKTAAVFAGTM 480
           I + N  C      LV ++   G+  G ++ G +SD FGRK   V+ G++
Sbjct: 115 IYQTNWHCSIQVSYLVQSLFIVGNAFGPMLLGPMSDIFGRKW--VYVGSL 162


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 325 SFIAEFNLACEDWKQTLVGTVHCFGSMIGQLVQGQLSDRFGRK 453
           S +A+FN++ +    TL  +++  GS +G +  G LSD  GRK
Sbjct: 107 SVMAQFNVSAQ--VATLCLSMNILGSGLGPMFLGPLSDIGGRK 147


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 355 EDWKQTLVGTVHC---FGSMIGQLVQGQLSDRFGRKTAAVFAGTMGAVLVS 498
           +D+   + G V+     G+++GQL+ G L D FGRK   V+   M  V+++
Sbjct: 78  QDYPSGIRGVVNAATNIGNIMGQLLFGFLGDFFGRK--FVYGKEMMVVIIA 126


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 LVGTVHCFGSMIGQLVQGQLSDRFGRK 453
           LV      G++ GQL+ G + D FGRK
Sbjct: 97  LVNAASNIGNIFGQLMFGFMGDFFGRK 123


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 KECRRHPVNDCMHLNISSNTECDE 303
           KE ++HP N    +N+S NT  DE
Sbjct: 166 KEFQKHPDNPFNKMNVSYNTSQDE 189


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 418 VQGQLSDRFGRKTAAVFAGTMGAVLVSARVSPLPSGS 528
           V     +++GR    +  G  G V ++ +V P  SGS
Sbjct: 342 VSASFVEKYGRCQEVIGRGAFGVVRIAHKVDPQNSGS 378


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 268 HLNISSNTECDEWIYENPRSFIAEFNLACEDWKQTLV 378
           H+ +S N EC + I+E P  F++  N   E+ +  +V
Sbjct: 215 HVLMSENNECSQAIFEIP-EFMSSINECIENLEYFIV 250


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 LVGTVHCFGSMIGQLVQGQLSDRFGRK 453
           LV      G++ GQL+ G + D FGRK
Sbjct: 97  LVNASANIGNIFGQLLFGFMGDFFGRK 123


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +1

Query: 361 WKQTLV-GTVHCFGSMIGQLVQGQLSDRFGRK-TAAVFAG--TMGAVLVSARV 507
           W+Q L+ GTV+  G + G ++    ++  G+K + A F+G   +G +L+   V
Sbjct: 56  WRQALLTGTVNA-GCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAV 107


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 373 LVGTVHCFGSMIGQLVQGQLSDRFGRK 453
           LV      G++ GQ++ G + D FGRK
Sbjct: 92  LVNAAANIGNVFGQILFGFMGDFFGRK 118


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 FAGTMGAVLVSARVSPLPSGST*FLEGLEAAIGD 567
           F G  G + + AR++ L    T F++G   AIG+
Sbjct: 118 FGGYSGTIQIIARINRLTGLETSFIDGKCDAIGE 151


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 412 QLVQGQLSDRFGRKTAAVFA 471
           Q + G+LSD FGR+   VFA
Sbjct: 83  QPLYGRLSDIFGRRPTVVFA 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,706
Number of Sequences: 5004
Number of extensions: 44119
Number of successful extensions: 124
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)