Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32335
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    98   8e-22
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   0.71 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    27   1.6  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.6  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 97.9 bits (233), Expect = 8e-22
 Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = +2

Query: 68  MSWQDYVDKQLMASRCVTKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFXNESLLTSG 244
           MSWQ YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF +   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 245 GVTIAGTRYIYLSGTXHIIXAKLGKXGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGE 424
           G+ +AG +YI +      I  KL K G+ C+ T+  +++S Y E   P +AA + E L +
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 425 YLITCGY 445
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 288 VPLR*MYRVPAIVTPPLVSSDSXSKPATIFATSSFEISKPSDFAHTLPS*PAMAAFVTHL 109
           VPL   Y    + T   + S   SKP+    +S  + + P +  H++PS  ++A   ++L
Sbjct: 488 VPLYPAYNSSPVQTRTSLFSSRLSKPSNPIVSSVSQANAPKNALHSMPSPTSLANLPSNL 547


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +2

Query: 170 GFEISKDEVAKIVAGFXNESLLTSGGVTIAGTRYIYLSGTXHIIXAKLGKXGVHCMKTQQ 349
           G EI KD     ++GF + S++    + I      +L    +I   K        MK   
Sbjct: 56  GCEILKDLA---LSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMKRIP 112

Query: 350 AVVISLYEEPIQPQQAASVVEKLGEY-LITCGYYKVEARR 466
           + V++ +   IQ +     +E   E+ LI CG   VEARR
Sbjct: 113 STVVTPFYGKIQDK----TIEFYKEFKLIICGLDSVEARR 148


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 506 SXWKKYYLIVLLDHGELRPYNNHR*LNILLTSPRQMRPAEV 384
           S W KY+  V+LDHG++  Y N +    L T P  +  A V
Sbjct: 533 SGWHKYW--VVLDHGKICEYANWKQSLELHTEPIDLLMATV 571


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 258 AIVTPPLVSSDSXSKP--ATIFATSSFEISKPSDFAHTLPS*PAM 130
           AIVT   ++S S S P  + +F      I KP    HTL   P +
Sbjct: 548 AIVTLSRIASQSTSDPPPSFVFRDDQLVIDKPGFVYHTLNDIPQL 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,728
Number of Sequences: 5004
Number of extensions: 35897
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)