Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32332
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    59   3e-10
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   2.6  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   3.4  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   4.5  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   4.5  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.0  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    25   6.0  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   6.0  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    25   6.0  
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    24   7.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 58.8 bits (136), Expect = 3e-10
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +3

Query: 288 FGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMA 407
           F +LI G +RNPS++  LFS AILGFAL+EA GLFCLM+A
Sbjct: 28  FSNLISGTSRNPSVRPHLFSMAILGFALTEATGLFCLMLA 67


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 35  NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 148
           + VC    R C ++ +   L   + +C  +    DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 109 HLQQYPPIHRWYLLSLHSSLQC 174
           HL  Y P   WYL SLH    C
Sbjct: 63  HLTIYEPQLTWYLSSLHRITGC 84


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 123 PTHTQMVPAVPTQLSAVRS 179
           P HT  VPAVP+Q+  + S
Sbjct: 182 PVHTPAVPAVPSQVKDLPS 200


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 245 DSGSSWFRSWYW 280
           D G SWFR+ YW
Sbjct: 421 DCGMSWFRNEYW 432


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  VCHLLQLCTGATT 112
           +CHLL+ CT  TT
Sbjct: 246 ICHLLKQCTSVTT 258


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  VCHLLQLCTGATT 112
           +CHLL+ CT  TT
Sbjct: 246 ICHLLKQCTSVTT 258


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  VCHLLQLCTGATT 112
           +CHLL+ CT  TT
Sbjct: 218 ICHLLKQCTSVTT 230


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 74  VCHLLQLCTGATT 112
           +CHLL+ CT  TT
Sbjct: 246 ICHLLKQCTSVTT 258


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 266 RSWYWNSLRLPHHRL 310
           + WY+NS RL  HRL
Sbjct: 79  QDWYYNSTRLLVHRL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,102
Number of Sequences: 5004
Number of extensions: 34220
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)