Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32328
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.60
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 29 0.60
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.4
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 28 1.4
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 1.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.4
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 27 3.2
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 3.2
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 3.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 4.2
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 5.6
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 5.6
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 5.6
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 7.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 7.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 7.4
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 9.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 9.8
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 9.8
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 25 9.8
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 25 9.8
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 453 PTSLKTNHKSIHSKKNQKSIHTKMNQKSIHA 545
P K +H S S ++ KS+ T NQK IH+
Sbjct: 856 PMKKKLSHSSASSTRSIKSLLTNANQKHIHS 886
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.60
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Frame = +2
Query: 329 NDNLYWLNLNSELTLISNPDKEKMDFWEKI-------------YDKHYRIWDETTNQSKN 469
N +L ++L S+L I P+K + + WE YD +++ T+ S
Sbjct: 204 NLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFSLE 263
Query: 470 EPQIDTFKKEPEIDTYQNEPEIDTCXKETEIDTYKNE 580
E + D + PE YQNE I+ ++KN+
Sbjct: 264 EIEKDLGRSLPEYPAYQNEEGINALRNVLVAFSWKNQ 300
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 459 SLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNRK*CPLSRQW 638
S +T SI S Q +I + HA+ + HT+ Q+SI ++ R ++
Sbjct: 718 SRQTTSSSIDSNNVQSNIEFLKGLNATHARSTSQVSHTQRLQQSISTSLERVKSNTKKES 777
Query: 639 S*PQVMNK 662
+ P+ ++K
Sbjct: 778 NSPRQVSK 785
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Frame = +2
Query: 62 RPIYYYRFDY---VGELNIAQKIFFSLGLKYAMHMDELGYL----FKNDFQKDVEPTPED 220
+PIY DY G+LN A + + + Y + +L K+D +++ T E
Sbjct: 545 KPIYQKWLDYESNYGDLNAAIALSQRMAVVYPQESTQAIFLSRYGLKDDAEEEERETKEA 604
Query: 221 IKMRERIVRLWTNFAKSGNPIPDENH 298
K+RE VRL GN P H
Sbjct: 605 EKIRELSVRL-----NGGNGFPGHVH 625
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = -2
Query: 280 RVPRFSEISPEP---DNPL---THLDIFRSRL-HVFLEVILEQIAQLVHVHSVLQSKTKE 122
R+P F EI +PL +H+D+ S + H+F + ++ L+HVH +
Sbjct: 676 RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGK 735
Query: 121 DLLGDIQFAHIIKSIVINWTVRNLEQIFY 35
D+QF + I + T + Y
Sbjct: 736 RKTQDVQFYREVSDIQFDETGNKKRKYMY 764
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.8
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Frame = +2
Query: 347 LNLNSELTLISNPDKEKMDFWEKIYDKHYRIWDETT---NQSKNEPQIDTF----KKEPE 505
LN +SE I+ +K+ D H ++TT + NE ++D KKE E
Sbjct: 43 LNDDSEAAKITTNEKQSSPV-----DSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDE 97
Query: 506 IDTYQNEPEIDTCXKETEIDTYKNEPEID 592
+ +NE E D +E E + E E D
Sbjct: 98 DNVEENEEEADANEEEEEDEEDDEEDEED 126
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 443 DETTNQSKNEPQIDTFKK-EPEIDTYQNEPEIDTCXKETEIDTYKN-EPEIDTPK 601
D + + E QID + + N+ E+DT E E T+K+ E ++ +PK
Sbjct: 96 DASLGKKSTEHQIDGIRNGSSNLQMEGNDKELDTDNNEDESTTFKDEEDDLISPK 150
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 29 RYIKYLLQVTNRPIYYYRFDYVGELNIAQKIFFSLGLKYAMHMDELGYLFKNDFQKDVEP 208
RY+K+L V N Y Y+F + I LKY +DEL +K + Q D P
Sbjct: 191 RYLKHLKSVPNVSYYIYKFPF----KILADKSLEDNLKY---LDELDENYKKECQVD-NP 242
Query: 209 TP 214
P
Sbjct: 243 QP 244
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 368 TLISNPDKEKMDFWEKIYDKHYRIWDETTNQSKNEPQIDTFKKEPE-IDTYQNEPEIDTC 544
T+ S+P K +W Y+K I T + K ++ +PE + + ++ +
Sbjct: 146 TINSSPFKSLSQYWNAAYNKKESISSSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSA 205
Query: 545 XKETEIDTYKNEPE 586
K T+ ++ +P+
Sbjct: 206 IKATKAFSHLTQPK 219
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +3
Query: 378 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQ 557
++R ++ ++ +++ + +K P + K + +K++K K+N+ S+H K
Sbjct: 933 RSRGDKKVVDNKRDASDSEDLAIKNPMNKKAKVGKVDFRKHEK----KLNKASMHRDKFS 988
Query: 558 KSIHT 572
+HT
Sbjct: 989 TGMHT 993
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 410 EKIYDKHYRIWDETTNQSKNEPQIDTFKKEPEIDTYQNEPEIDTCXK---ETEID 565
E +Y Y +W + ++QSK + + +++ E D + + +T K ET +D
Sbjct: 1094 ENVYINSYNLWVDQSSQSKKQNRTTNWRRWLESDEGWRKSKANTDIKFFSETTLD 1148
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 450 RPTSLKTNHKSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTKMNQKSIRPNMNRK 614
R TS K + K SKK ++ K K + K HT+ ++ +R ++K
Sbjct: 131 RKTSGKESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 435 ESGMKRPTSLKTNHKSIHSKKNQKSIHTKMNQK-SIHAKKKQKSIHTKMNQKSIRPN 602
ES RP + + I QK + + +K S H K Q + N+ + PN
Sbjct: 226 ESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSPN 282
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 443 PRFCSVCRRFSPKSPSSLCPGLRLKLILNLDLASINCRLLPVASWCSN 300
P C++ + P C L +K+ N+ + INC L+P ++ N
Sbjct: 527 PSQCAISKHILQSKPQ-YCANLGMKI--NVKVGGINCSLIPKSNPLGN 571
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 170 YLFKNDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHYLNTNWL 319
YLF+ +++K + RE++ W +AK P P + WL
Sbjct: 101 YLFE-EYKKQQGTNKSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWL 149
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 422 DKHYRIWDETTNQSKN 469
DK RIWD T+N+ K+
Sbjct: 242 DKTIRIWDSTSNKKKS 257
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 7.4
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Frame = +2
Query: 182 NDFQKDVEPTPEDIKMRERIVRLWTNFAKSGNPIPDENHYL-----------NTNWLPVT 328
++ D EP ++ + I + TN+ + +PD NH L N+ +P +
Sbjct: 961 DESSSDEEPPMSNLSPQISIGSV-TNYTSAVTELPDPNHQLEMSTTTHVQHPNSETIPSS 1019
Query: 329 NDNLYW--------LNLNSELTLISNPDKEKMDF 406
+N Y+ N N+E+T+ SN + DF
Sbjct: 1020 TENQYFDTTSGAFEANSNTEVTVNSNEVSQPFDF 1053
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.0 bits (52), Expect = 9.8
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 378 QTRTKRRWTFGRKSTTNTTESGMKRPTSLKTNHKSI--HSKKNQKSIHTKMNQKSIHAKK 551
Q K+ + G K + +S + L ++S+ +S+KN+K K Q+S
Sbjct: 264 QKEEKKTISQGNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPLQESSINSV 323
Query: 552 KQKSIHTKMNQKSIRPNMNR 611
K+ + + +K RP N+
Sbjct: 324 KEGESNPVVKRKRGRPRKNK 343
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 239 IVRLWTNFAKSGNPIPDENHYLNTNWLPVTNDNLYWLNLNSELTLI 376
+V+ W N A SGN + D W+ + LY L+S + +I
Sbjct: 1760 LVKTWWNEAASGNNLADLIIQHLARWISSSKSYLYSPLLSSHVEVI 1805
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 477 KSIHSKKNQKSIHTKMNQKSIHAKKKQKSIHTK-MNQKSIRPNMNR 611
++IH + Q+ H ++ IHA +K++ T M ++S+ R
Sbjct: 241 QTIHEEYEQQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKER 286
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +3
Query: 471 NHKSIHSKKNQKSIHTKMNQK-SIHAKKKQKS 563
NH++ SKK++K++ KMNQ+ HAK+ QK+
Sbjct: 287 NHEN--SKKHKKNLR-KMNQEIKKHAKEAQKN 315
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 313 VGVQIVVFVRYRVPRFSEIS 254
+G+ + VF +R PRFS ++
Sbjct: 84 IGINVGVFALWRAPRFSHLN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,572
Number of Sequences: 5004
Number of extensions: 63171
Number of successful extensions: 272
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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