Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32327
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 181 TKKHVIIDGSLNPHXDLLPYCQSL 252
           T KH II+   NP    L  C+SL
Sbjct: 68  TYKHTIIEMDSNPIKTALSVCKSL 91


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 219 RVQRAINNDVFFCVVNLIACTIPASKSLVNT-CE 121
           ++Q+ +NND  F  VN        ++ ++NT CE
Sbjct: 384 KMQKMVNNDFNFDDVNFRIMNANVNELILNTRCE 417


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 219 RVQRAINNDVFFCVVNLIACTIPASKSLVNT-CE 121
           ++Q+ +NND  F  VN        ++ ++NT CE
Sbjct: 384 KMQKMVNNDFNFDDVNFRIMNANVNELILNTRCE 417


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 219 RVQRAINNDVFFCVVNLIACTIPASKSLVNT-CE 121
           ++Q+ +NND  F  VN        ++ ++NT CE
Sbjct: 384 KMQKMVNNDFNFDDVNFRIMNANVNELILNTRCE 417


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 382 TEFAEAPNLQHLFLVRVNYA 441
           T+F +AP L+  F   ++YA
Sbjct: 27  TQFGQAPLLERFFWRTLDYA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,497
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)