Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32321
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 36 0.005
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 4.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 25 6.5
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 6.5
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 8.6
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 25 8.6
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.6
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/80 (26%), Positives = 39/80 (48%)
Frame = +3
Query: 132 VAXKHSRRATNTTGPQFNQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWE 311
V+ K++ R+ NQ+ RE G +LHL E W K+ P+ K+ + ++
Sbjct: 32 VSYKYTNRSPKMA---LNQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFM 88
Query: 312 IQIPANPDGSCALKHDSRVQ 371
+ +P+ S +L +DS +
Sbjct: 89 HEFEFDPENSISLNYDSETK 108
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 387 NLYRISPWASYVKPHEGFTYQHFIYKPEQPY 479
+LY + P+A +V P+ G+ YQ+ +Y E Y
Sbjct: 26 HLY-VWPFALFVYPYIGYVYQNKLYSEEVRY 55
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 35 KGDGYLKPYEREIRREICLLQRHLGTVSNHGD 130
KG+ +LK +ERE+ E+ LQ+ + H D
Sbjct: 2542 KGNYHLKEHEREVSSELLNLQQLSAEHNRHAD 2573
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 100 SL*QAYLPSNFSFVWLQITVSFLIISLNLVQAL 2
SL LPS+FSF+W + F+ ++L +A+
Sbjct: 890 SLFSLKLPSSFSFLWGYAILLFIYFLMDLSRAI 922
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 137 SHRPHDSIRSPNVFVASISPF*FLFRMASNNRLLSNNF 24
SHR DS++ + ISP L M SN + NNF
Sbjct: 272 SHRLRDSLKEVYQYRRIISPPPGLSSMDSNGSSIENNF 309
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +3
Query: 393 YRISPWASYVKPHEGFTYQ 449
Y + W Y+K HEG T +
Sbjct: 30 YSLKSWLRYIKTHEGSTLE 48
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 225 AHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 335
A LH N WD +S + +GK +IP N D
Sbjct: 85 AEDLHYGRYINDWDIQSEVLKESSFGK--EKIPVNED 119
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 417 YVKPHEGFT-YQHFIYKPEQPYKFKHPKVDKPKSLRIYECHVGIATSE 557
+VK HE + + K E+ YK D P RI C GI TSE
Sbjct: 15 WVKFHESLNPIRSSLIKQEECYKTVDGD-DNPIEERIKACDAGIQTSE 61
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 199 TEPS*LNWGPVVFVALRECX*ATVPMI-RYGPQM 101
T P L WG F+ L AT+ +I R+GP +
Sbjct: 258 TSPHALGWGSAQFIGLGFSVFATIIIIERFGPPL 291
>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 585 ELVVRAPLYPRTLLYQRDTR 526
+ V+ P+YP+ LY DTR
Sbjct: 46 KFAVKVPVYPKRPLYTTDTR 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,341
Number of Sequences: 5004
Number of extensions: 64477
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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