Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32321
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 113 1e-25
04_03_0846 - 20249085-20249192,20249418-20249501,20249687-202498... 103 1e-22
06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831... 85 4e-17
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656... 31 0.94
06_01_0498 + 3570543-3571136,3579620-3580348 29 3.8
06_01_0495 - 3546131-3547588 29 3.8
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 3.8
02_04_0329 + 22081052-22082434 28 5.0
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078... 28 5.0
01_05_0509 + 22811184-22812038,22813493-22814020 28 5.0
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258... 28 6.6
07_03_1242 + 25113464-25114150 27 8.7
04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370 27 8.7
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 113 bits (271), Expect = 1e-25
Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Frame = +3
Query: 180 FNQDGS-VTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKH 356
FN VT+REWAPGAHS L G+FN W+ + +K E+G WEI +P N DGS + H
Sbjct: 194 FNHSAEGVTYREWAPGAHSAALVGDFNNWNPNADRMSKNEFGVWEIFLPNNADGSSPIPH 253
Query: 357 DSRVQIIV---NDNLYRISPWASY-VKPHEGFTYQHFIYKP--EQPYKFKHPKVDKPKSL 518
SRV++ + + I W Y V+ Y Y P E+ Y FKHP+ +PKSL
Sbjct: 254 GSRVKVRMETPSGIKDSIPAWIKYSVQAAGEIPYNGIYYDPPEEEKYIFKHPQPKRPKSL 313
Query: 519 RIYECHVGIATSEGKV 566
RIYE HVG++++E K+
Sbjct: 314 RIYETHVGMSSTEPKI 329
>04_03_0846 -
20249085-20249192,20249418-20249501,20249687-20249803,
20249899-20249979,20250563-20250622,20250762-20250804,
20250899-20250997,20251260-20251531,20251765-20251886,
20252376-20252517
Length = 375
Score = 103 bits (247), Expect = 1e-22
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Frame = +3
Query: 198 VTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQII 377
+T+REWAPGA S L G+FN W+ + + EYG WEI +P N DGS A+ H SRV+I
Sbjct: 216 ITYREWAPGAQSAALVGDFNNWNPNADTMTRNEYGVWEISLPNNADGSPAIPHGSRVKIR 275
Query: 378 VNDN---LYRISPWASYVKPHEG-FTYQHFIYKP--EQPYKFKHPKVDKPKSLRIYECHV 539
++ I W + G Y Y P E+ Y F+HP+ +P SLRIYE H+
Sbjct: 276 MDTPSGVKDSIPAWIKFAVQAPGEIPYNGIYYDPPEEEKYVFQHPQPKRPNSLRIYESHI 335
Query: 540 GIAT 551
G+++
Sbjct: 336 GMSS 339
>06_03_1473 -
30382528-30382731,30382814-30382930,30383048-30383129,
30383211-30383278,30383444-30383545,30383994-30384122,
30384561-30384623,30384781-30384897,30385210-30386116,
30386225-30386494,30386929-30386998,30387114-30387273
Length = 762
Score = 85.0 bits (201), Expect = 4e-17
Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Frame = +3
Query: 189 DGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRV 368
DG+ +REWAP A L GEFN W+ H K ++G W I+I ++ +G A+ H+S+V
Sbjct: 64 DGATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDKFGIWSIKI-SHVNGKPAIPHNSKV 122
Query: 369 QIIVNDN----LYRISPW---ASYVKPHEGFTYQHFIYKPE--QPYKFKHPKVDKPKSLR 521
+ + RI W A++ G Y + P + Y FKHP+ KP + R
Sbjct: 123 KFRFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPR 182
Query: 522 IYECHVGIATSEGKV 566
IYE HVG++ E +V
Sbjct: 183 IYEAHVGMSGEEPEV 197
>08_01_0727 +
6567935-6568112,6568197-6568912,6569061-6569162,
6569236-6569547,6569862-6570299
Length = 581
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 222 GAHS-LHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYR 398
G H L +R F W SK+ F + G +++ P P + H+ +I+N N Y+
Sbjct: 437 GVHQKLCIRAPFGNWQSKNEKFVAVK-GLPKVRCPFRP-----VYHE----MIINGNSYK 486
Query: 399 ISPWASYVKPHEGFTYQHF 455
+ A +++ H G T + +
Sbjct: 487 VLKVAGWMRVHPGRTLEDY 505
>06_01_0498 + 3570543-3571136,3579620-3580348
Length = 440
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 314 SNPRKSRWFVCIE--TRLPCPNHSERQLVQDITVGQLRE 424
+ P R+ +C E PCP ERQ + DI G+L E
Sbjct: 280 TTPGIVRFDMCSEEFASFPCPPFMERQKMSDIACGELTE 318
>06_01_0495 - 3546131-3547588
Length = 485
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 314 SNPRKSRWFVCIE--TRLPCPNHSERQLVQDITVGQLRE 424
+ P R+ VC E PCP ERQ + D+ G L E
Sbjct: 325 TTPGIVRFDVCSEEFASFPCPPFMERQKMSDVACGDLTE 363
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 112 RIESWGRWLXSIHEGLQILRDPNLIRMAPLRGASGLQERIA 234
R W +W+ +L PN+ + G+ GLQE A
Sbjct: 308 RQNDWNKWVIPRESNTDVLPSPNINNLTAHLGSVGLQESAA 348
>02_04_0329 + 22081052-22082434
Length = 460
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 294 EYGKWEIQIPANPDGSCALKHDSRVQIIVNDNLYRISPWAS 416
E WE DG A + +++ I+VN+ LY + P +S
Sbjct: 322 ELNSWETMADGLGDGWPARQAGTKLGIVVNEELYTLEPSSS 362
>01_06_1258 +
35806557-35806932,35807517-35807679,35807789-35807837,
35807943-35808866,35808954-35809049,35809142-35809257,
35809345-35809447,35809570-35809658,35809750-35809900,
35809995-35810141,35810238-35810366,35810451-35810529,
35810616-35810725
Length = 843
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 518 KRLWLVYLWMLEFVGLF 468
KR+WLV LW+ VGLF
Sbjct: 291 KRIWLVALWLAVNVGLF 307
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 509 WLVYLWMLEFVGLFWLINKMLISKTLVWLHVTG 411
WL L ML +V L++ + ++ +LVW V G
Sbjct: 205 WLKNLSMLAYVSAVGLVSSVALTASLVWAGVAG 237
>04_04_0973 +
29825057-29825344,29825447-29825552,29825750-29825845,
29826335-29826690,29826980-29827721,29828064-29828083
Length = 535
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 5 CLYQI*RNY*KGDGYLKPY--EREIRREICLLQRHLGTVS 118
C Y + Y K DG+L PY +R L HLG+ S
Sbjct: 133 CYYLVDAGYTKADGFLAPYRGQRYHLGRFTALMEHLGSSS 172
>07_03_1242 + 25113464-25114150
Length = 228
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 83 ICLLQRHLGTVSNHGDGGLXAFTKGYKYYG 172
+CL H+G VS G GG A +G+ G
Sbjct: 160 LCLFMLHIGCVSPAGAGGAPAGARGWPATG 189
>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
Length = 321
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 64 KRN*KGDMLATKTF-GDRIESWGRWLXSIHE 153
K+ + D L T+ G R+ SWG+W+ I E
Sbjct: 51 KKRPRSDHLKHPTYRGVRMRSWGKWVSEIRE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,761,561
Number of Sequences: 37544
Number of extensions: 432775
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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