Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32321
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.76 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +2

Query: 314 SNPR-KSRWFVCI-ETRLPCPNH--SERQLVQDITVGQLREATRGFY 442
           S PR ++  F+C  ETR     H  S+R+     T+GQ+RE  R FY
Sbjct: 110 SYPRMRAPSFICENETRQGLTLHYRSKRRGFVYYTMGQIREVARHFY 156


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 18  FREIIRKETVI*SHTKEKLEGRYAC 92
           + +I+   T++  H KE  EG Y C
Sbjct: 762 YTKILSNGTLLLQHVKEDREGFYLC 786


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 18  FREIIRKETVI*SHTKEKLEGRYAC 92
           + +I+   T++  H KE  EG Y C
Sbjct: 758 YTKILSNGTLLLQHVKEDREGFYLC 782


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 390 LYRISPWASYVKPHEGFTYQ 449
           LY+ SP+  Y  P E   YQ
Sbjct: 82  LYQQSPYLMYENPDEEKRYQ 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,209
Number of Sequences: 438
Number of extensions: 4307
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)