Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32315
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 96 2e-20
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 95 4e-20
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 93 1e-19
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 67 8e-12
05_04_0374 - 20736615-20737037,20737148-20737639,20738145-207384... 29 2.1
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 96.3 bits (229), Expect = 2e-20
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 1/157 (0%)
Frame = +3
Query: 120 GRVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXX 296
GR+++SP+AR+LAE N+ L GTG G + D+
Sbjct: 1758 GRIFSSPLARKLAEDNNVPLSSVMGTGPDGRILKADIEDYLASVAKGGKREALAAPGL-- 1815
Query: 297 XXXTFVDLPLSGMRETIAKRLTAAKQSXPHYQLXVTVNVEKTLAMRKLVNERLASEKADV 476
++ D+P + +R+ A RL ++KQ+ PHY L V V+ + +R +N L
Sbjct: 1816 ---SYTDVPNTQIRKVTANRLLSSKQTIPHYYLTVDARVDNLIKLRGELNP-LQESSGGK 1871
Query: 477 KVSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNV 587
K+S+ND +IKA A A ++VP NS WM FIRQ+ NV
Sbjct: 1872 KISINDLVIKAAALALRKVPQCNSSWMSDFIRQYHNV 1908
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 95.1 bits (226), Expect = 4e-20
Identities = 56/156 (35%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Frame = +3
Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 299
R ++SP+AR+LAE N+ L +GTG G + D+
Sbjct: 213 RTFSSPIARKLAEDNNVPLSSIKGTGPDGRILKADIEDYLASVAKGAKKETAAAPGLG-- 270
Query: 300 XXTFVDLPLSGMRETIAKRLTAAKQSXPHYQLXVTVNVEKTLAMRKLVNERLASEKADVK 479
+VDLP + +R+ A RL +KQ+ PHY L V V+K + +R +N L K
Sbjct: 271 ---YVDLPNTQIRKVTANRLLHSKQTIPHYYLTVDTRVDKLIKLRSELNP-LQDTSGGKK 326
Query: 480 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNV 587
+S+ND +IKA A A + VP NS WM FIRQ+ NV
Sbjct: 327 ISINDLVIKAAALALRNVPECNSSWMNDFIRQYHNV 362
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 93.1 bits (221), Expect = 1e-19
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDLXXXXXXXXXXXXXXXXXXXXXXXX 299
R+++SP+AR+LAE N+ L +GTG G + D+
Sbjct: 256 RIFSSPLARKLAEDNNVPLSSVKGTGPDGRILKADIEDYLAKGCRKEALAAPGL------ 309
Query: 300 XXTFVDLPLSGMRETIAKRLTAAKQSXPHYQLXVTVNVEKTLAMRKLVNERLASEKADVK 479
++ D+P + +R+ A RL ++KQ+ PHY L V V+ + +R +N L K
Sbjct: 310 --SYTDVPNAQIRKVTANRLLSSKQTIPHYYLTVDTRVDNLIKLRGELNP-LQESSGGKK 366
Query: 480 VSVNDFIIKAVAAACKRVPTVNSHWMESFIRQFSNV 587
+S+ND +IKA A A ++VP NS WM FIRQ+ NV
Sbjct: 367 ISINDLVIKAAALALRKVPQCNSSWMNDFIRQYHNV 402
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 67.3 bits (157), Expect = 8e-12
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +3
Query: 309 FVDLPLSGMRETIAKRLTAAKQSXPHYQLXVTVNVEKTLAMRKLVNERLASEKADVKVSV 488
+ D+P S +R+ IAKRL +KQ+ PH L V ++ LA R NE E+ VKVSV
Sbjct: 348 YEDIPNSQIRKVIAKRLLESKQTTPHLYLSQDVILDPLLAFR---NE--LKEQHGVKVSV 402
Query: 489 NDFIIKAVAAACKRVPTVNSHW 554
ND +IKAVA A + VP N++W
Sbjct: 403 NDIVIKAVALALRNVPEANAYW 424
>05_04_0374 -
20736615-20737037,20737148-20737639,20738145-20738422,
20738576-20738732
Length = 449
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 508 PWRLPASACLQSTHIGW 558
PW LPA +CLQS + W
Sbjct: 48 PWDLPAQSCLQSRDLEW 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,573,409
Number of Sequences: 37544
Number of extensions: 156304
Number of successful extensions: 329
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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