Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32314
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical...    31   0.63 
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    31   0.63 
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12a protein.
          Length = 544

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 235 IRIKMIKYYFCTY*CNLKGLFVLRLCYLWLFYVFQVLGCFITDLFNQFXLLKAGVDTY 408
           ++I  + Y+   Y      LF    C  W F    +   F T LF +F  L+   DTY
Sbjct: 217 VKITRVFYFLTVYWTCWTLLFAFGTCIGWTFLAIGIRLFFTTYLFEKFPKLRFRFDTY 274


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 235 IRIKMIKYYFCTY*CNLKGLFVLRLCYLWLFYVFQVLGCFITDLFNQFXLLKAGVDTY 408
           ++I  + Y+   Y      LF    C  W F    +   F T LF +F  L+   DTY
Sbjct: 317 VKITRVFYFLTVYWTCWTLLFAFGTCIGWTFLAIGIRLFFTTYLFEKFPKLRFRFDTY 374


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 247 FLCVFNTSIFYDIINYLL*REQCEHL*SECYQITRVSHTXVFFKSF--IFPCRI*LLGPG 74
           FL   NT +     N L  R Q E         T +S   VFF S   IF   I LLGPG
Sbjct: 201 FLVKINTILKEKWRNSLSTRYQMEENIITTKFSTFISFIHVFFFSLYLIFTLIIRLLGPG 260

Query: 73  FFRNDLDKFS 44
           F +   D  S
Sbjct: 261 FLKTQADLMS 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,739
Number of Sequences: 27780
Number of extensions: 240142
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)