Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32313
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 58 1e-09
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 54 9e-09
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 54 1e-08
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 53 3e-08
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 52 5e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 7e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 51 1e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 2e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 5e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 48 8e-07
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 8e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 47 2e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 44 1e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 44 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 42 7e-05
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 41 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 2e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 3e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 37 0.002
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.002
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 35 0.006
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.006
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 35 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.011
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 33 0.019
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 32 0.043
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.057
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.075
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 29 0.40
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.53
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 28 0.70
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.92
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 1.2
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 1.2
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 27 2.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 27 2.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.1
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 2.8
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 26 3.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 4.9
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa... 25 8.6
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 8.6
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 57.6 bits (133), Expect = 1e-09
Identities = 28/81 (34%), Positives = 49/81 (60%)
Frame = +3
Query: 114 DGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 293
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFAFV +++R A +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 294 ALDTMDGRMLDGRELRVQMAR 356
A D +DG + LR + ++
Sbjct: 259 ARDRLDGYGWNNLILRCEFSK 279
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 54.4 bits (125), Expect = 9e-09
Identities = 26/72 (36%), Positives = 42/72 (58%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
V NL++ TT E + +F + GE+ I + DR+T+ GF FV +FE +DA ++L +
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95
Query: 315 RMLDGRELRVQM 350
LD R +R +
Sbjct: 96 TSLDERIIRADL 107
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 54.0 bits (124), Expect = 1e-08
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESR----GFAFVRFFERRDAEEALD 302
V L+ T ++R +FE G V + IP R R +R G AFV F + D ++A++
Sbjct: 48 VGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIE 107
Query: 303 TMDGRMLDGRELRVQMAR 356
T++G+ LD RE+ VQ AR
Sbjct: 108 TLNGKTLDDREIVVQKAR 125
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 237 RESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 353
R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 52.8 bits (121), Expect = 3e-08
Identities = 28/81 (34%), Positives = 43/81 (53%)
Frame = +3
Query: 114 DGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 293
D ++ + L+Y T D+ R F R G + I + R++ T +S G+AFV F RD +
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKV 156
Query: 294 ALDTMDGRMLDGRELRVQMAR 356
A G ML+GR + V + R
Sbjct: 157 AYKASAGLMLNGRRIVVDVER 177
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 52.0 bits (119), Expect = 5e-08
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +3
Query: 141 NLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRM 320
NLTY +DL+ +F G++ +++P D+ T +GFA++ F + DA A +D +
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388
Query: 321 LDGRELRVQMAR 356
GR L V A+
Sbjct: 389 FQGRLLHVLPAK 400
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/73 (30%), Positives = 40/73 (54%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
+ NL + T +D++ + G++ + +P+ ++ R +RGFAF F R+A A+ +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 315 RMLDGRELRVQMA 353
L GR L +Q A
Sbjct: 784 THLLGRHLVLQYA 796
Score = 39.9 bits (89), Expect = 2e-04
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERX-GEVGDIYIPRDRYTRE----SRGFAFVRFFERRDAE 290
++ V NL + T E+ ++VF+ G + + + R S GF FV F ++ A
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679
Query: 291 EALDTMDGRMLDGRELRVQMARYG 362
A+ M+G +LDG +L ++++ G
Sbjct: 680 AAMHAMNGFVLDGHKLEIKLSHQG 703
Score = 25.4 bits (53), Expect = 4.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 171 LRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQM 350
L+ + + E+ D+ + + + SR FAF+ F DA++A+ ++ ++ + V
Sbjct: 22 LKSLPQLDAEITDVSVAKTK-EGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHR 80
Query: 351 A 353
A
Sbjct: 81 A 81
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 7e-08
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V N+ + T ED++ +FE G++ +++ RD R S+GF ++++ A AL+ M
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400
Query: 309 DGRMLDGRELRV 344
+G L GR +RV
Sbjct: 401 NGFDLAGRNMRV 412
Score = 41.5 bits (93), Expect = 7e-05
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
V L R T +L FE+ G V D I RD+ + S+G A+V F D+ +A + G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFC-HEDSVQAAIALSG 302
Query: 315 RMLDGRELRVQM 350
+ L G + VQ+
Sbjct: 303 KRLLGLPVIVQL 314
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/76 (32%), Positives = 42/76 (55%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V + R ++L+++F + G V + I R+ T+ SRGF F+ F +A A+D +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 309 DGRMLDGRELRVQMAR 356
+ + GR L VQ A+
Sbjct: 163 NSQEFYGRVLNVQKAK 178
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 50.4 bits (115), Expect = 2e-07
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 305
SL V L T L +F G V I + RD TR S G+A+V F D E+ALD
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 306 MDGRMLDGRELRVQMAR 356
++ ++ GR R+ ++
Sbjct: 141 LNYTLIKGRPCRIMWSQ 157
Score = 37.9 bits (84), Expect = 9e-04
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 305
+L + NL E L+ F G + I D + S+GF FV + +A +A+
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTE 423
Query: 306 MDGRMLDGRELRVQMAR 356
M+ RML G+ L V +A+
Sbjct: 424 MNQRMLAGKPLYVALAQ 440
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 5e-07
Identities = 28/77 (36%), Positives = 41/77 (53%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 305
S+ V N+ Y TPE+L+ F G V + I D++T +GFA++ F E AL
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-L 114
Query: 306 MDGRMLDGRELRVQMAR 356
++G ML R L+V R
Sbjct: 115 LNGSMLHERPLKVTPKR 131
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 48.0 bits (109), Expect = 8e-07
Identities = 28/90 (31%), Positives = 45/90 (50%)
Frame = +3
Query: 87 SYGRPPPRIDGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVR 266
S P P+ D + V NL + E L R F G + + I RD T +GFA+++
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 267 FFERRDAEEALDTMDGRMLDGRELRVQMAR 356
F + ++AL + +M +GR LR+ A+
Sbjct: 318 FKDTMGVDKALLLNEKKMPEGRTLRIMRAK 347
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 48.0 bits (109), Expect = 8e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
+ NL + +D+ VF GE DI + RD+ T +S+GFAF+++ ++R A+D M
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTN 94
Query: 315 RMLDGRELRV 344
L R +RV
Sbjct: 95 VKLLDRLVRV 104
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/76 (32%), Positives = 38/76 (50%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 305
+L V NL ++T +DL F G + + + T E+RG+ FV F DA+ A
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 306 MDGRMLDGRELRVQMA 353
+ + L GR LR+ A
Sbjct: 66 LKNKKLHGRILRLDFA 81
Score = 46.4 bits (105), Expect = 2e-06
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 108 RIDGMXSLKVDNLTYRTT-PEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRD 284
R D L + NL + P+ L F + G+V +I IP R GFAFV +R+
Sbjct: 102 RQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKA 160
Query: 285 AEEALDTMDGRMLDGRELRVQMA 353
AEEA+++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 46.8 bits (106), Expect = 2e-06
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Frame = +3
Query: 99 PPPRIDGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFER 278
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF F+ F
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Query: 279 RDAEEALDT---MDGRMLD 326
+ E + +DG+++D
Sbjct: 215 KCVNEVMSKEHHLDGKIID 233
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 44.0 bits (99), Expect = 1e-05
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDT 305
++ + NL + T L + + G V +I+IPRDR GF F F +D E A
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 306 MDGRMLDGRELRVQMA 353
++ L G+ +RV A
Sbjct: 72 LNQVKLFGKPIRVNRA 87
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.6 bits (98), Expect = 2e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
V NL++ T +DL F G++ I +P D + +GF +V F + A++ ++ M+G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428
Query: 315 RMLDGRELRVQMA 353
+ GR R+ +
Sbjct: 429 HFIAGRPCRLDFS 441
Score = 28.7 bits (61), Expect = 0.53
Identities = 16/73 (21%), Positives = 34/73 (46%)
Frame = +3
Query: 135 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDG 314
V L++ + L + FE G + + D + S+G+ +V F A+ A+
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 315 RMLDGRELRVQMA 353
+ +DGR + + ++
Sbjct: 327 KEIDGRMVNLDLS 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 41.5 bits (93), Expect = 7e-05
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 156 TTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRE 335
T EDL +F R G++ + RD+ T +S +AF+ F + E+A M ++D
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 336 LRVQMAR 356
+ V ++
Sbjct: 315 IHVDFSQ 321
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 207 DIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLD--GRELRVQMAR 356
DI IPR TR SR FAFV + + RDAE+A + GR L+ G LRV+ A+
Sbjct: 37 DIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.9 bits (89), Expect = 2e-04
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRRVF-ERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALD 302
S+ V +L+ D+ +F R I D T SRG+ FVRF + D + AL
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 303 TMDGRMLDGRELRVQMA 353
M G++ R +RV +A
Sbjct: 247 EMQGQICGDRPIRVGLA 263
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.5 bits (88), Expect = 3e-04
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V N+ ++ +D+ F G+V + IP+ R+ + +GF +V +DAE AL
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RF-NQHKGFGYVVMTTNQDAENALSAA 816
Query: 309 DGRMLDGRELRVQMAR 356
G+ L R L V +++
Sbjct: 817 -GKQLGNRVLNVVLSK 831
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +3
Query: 111 IDGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 290
+D + + NL + + + + G++ + ++ S+GF F F DAE
Sbjct: 306 LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
Query: 291 EALDTMDGRMLDGRELRVQMARYG 362
A+ +DG+ G +L Q A G
Sbjct: 366 VAISGLDGKDTYGNKLHAQFACVG 389
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRF 269
L V NL ++ E L+ F+R G+V + IP D+ + +G+AFV F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 35.1 bits (77), Expect = 0.006
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 246 RGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 356
RG AF F+ +A+ + T++G ++GR LRV+ R
Sbjct: 243 RGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEWKR 279
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +3
Query: 96 RPPPRIDGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFE 275
RP ++G + V + T E + +F G V ++++ DR T +G+A + +
Sbjct: 2 RPAKSVEGYIII-VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
Query: 276 RRDAEEALDTMDGRMLDGRELRVQMA 353
A++A+D + +LD +L V A
Sbjct: 61 LEQAQKAVDEKNLSLLD-EKLEVDFA 85
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 35.1 bits (77), Expect = 0.006
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 225 DRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMA 353
D T SR + FVRF ++ + AL M G + GR LR+ +A
Sbjct: 217 DPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.011
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L + NL+++ T E++ +F R G V I + T ++RG AFV + +DA A + +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGN---TVQTRGTAFVVYENVQDARRACEKL 70
Query: 309 DG 314
G
Sbjct: 71 SG 72
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.5 bits (73), Expect = 0.019
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 165 EDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 332
+D+ E+ G V ++ + Y +E G VRF +AE + M GR DGR
Sbjct: 274 DDITEEAEKCGRVTNVVL----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 32.3 bits (70), Expect = 0.043
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V L + + +R F + G V + + R+R T S+ +AF+ F A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 309 DGRMLDGRELRVQM 350
+L G+ L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.9 bits (69), Expect = 0.057
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRF 269
L V NL + TT DL+ F + G++ + + T + +GF FV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 31.5 bits (68), Expect = 0.075
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = +3
Query: 126 SLKVDNLTYRTTPEDLRR----VFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEE 293
+L V+NL + DLR +F G V DI + T + RG A V FF+ A
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAI 61
Query: 294 ALDTMDGRMLDGRELRVQMA 353
A+ + + G+E+++Q A
Sbjct: 62 AMKALKNFIFFGKEMKIQYA 81
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 29.1 bits (62), Expect = 0.40
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 FERXGEVGDIYIPRDRYTRESRGFA--FVRFFERRDAEEALDTMDGRMLDGRELRVQMAR 356
F + G++ I I + + G ++ + + DA A+ +DG + DGR LR A
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLR---AS 198
Query: 357 YG 362
YG
Sbjct: 199 YG 200
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.7 bits (61), Expect = 0.53
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V + + T ED+ F+ G++ D + GF FV + RDA + ++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIVNDF 57
Query: 309 DGRMLDGRELRVQMAR 356
G+ G + V+ AR
Sbjct: 58 QGKEFMGSRIVVEPAR 73
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 28.3 bits (60), Expect = 0.70
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 243 SRGFAFVRFFERRDAEEALDTMDGRMLDG-RELRVQM 350
S+G A + F DA A + +GR++DG R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.9 bits (59), Expect = 0.92
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +3
Query: 129 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTM 308
L V NL E L + F + + RDR + +RGF FV F + +A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKDSDQFLKAWREK 90
Query: 309 DGRMLDGRELRVQMA 353
+G+ + R +++ A
Sbjct: 91 NGKYIGSRPVKLSRA 105
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 126 SLKVDNL--TYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEAL 299
+L V NL T T L +F G + + + S+G+ FV F + A A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 300 DTMDGRMLDGRELRVQMA 353
DT++G M+ + + V A
Sbjct: 443 DTLNGMMVGKKRIFVCFA 460
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.5 bits (58), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 267 FFERRDAEEALDTMDGRMLDGRELRV 344
F++ RDA ALD +DGR++ L+V
Sbjct: 336 FYDTRDASFALDELDGRIIHNCCLQV 361
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 165 EDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRV 344
ED+ F + GEV + + D G +VRF A+ A+D ++ R R +
Sbjct: 78 EDMFCEFSKYGEVEQLVVC-DNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
Query: 345 QMA 353
+++
Sbjct: 137 ELS 139
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 2.1
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 156 TTPEDLRRVFERX-GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGR 332
T +D+ + R E GDI R SRG AF+ + +A+ A + M + LD
Sbjct: 182 TPTDDIEEIVSRHFAEWGDIERIR---VLNSRGIAFITYLNEANAQFAKEAMAHQSLDHD 238
Query: 333 E-LRVQMA 353
E L V+ A
Sbjct: 239 ECLNVRWA 246
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.6 bits (56), Expect = 2.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 144 DYLLLTXPCHRFVAEVFRNSF*VV*IFSSNQTN*II 37
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 462 NGCGYDCASNYDGGNETWTCACD 394
+GC + Y+GG +TW C+ D
Sbjct: 89 DGCNDLVPNVYEGGYKTWECSLD 111
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 3.7
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +3
Query: 111 IDGMXSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 290
I G ++ ++NL T+ +D+ GE+ + + + + A VRF A+
Sbjct: 96 IAGPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVNDS----QGKVRASVRFSTLASAQ 151
Query: 291 EALDTMDGRMLDGREL 338
+ + +DG DG +L
Sbjct: 152 QVVQKLDGVTADGFKL 167
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 72 ILLKMSYGRPPPRIDGMXSLKVDNLTYRTT-PEDLRRVFERXGEVGDI 212
ILL+ + + D M S + + L +R PED+R FE G GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902
>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Frame = -3
Query: 293 FFSVTTLEKPHEGESS------TFPCVPISGNVDIXNFSAPFE 183
FF V EK E SS P PI+ N + NF+ P E
Sbjct: 232 FFKVIIAEKSGEPTSSPSVAAFVLPNKPIADNFPLKNFAVPVE 274
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Frame = -2
Query: 471 DCANGCGYDC---ASNY 430
DC + CGY+C A NY
Sbjct: 65 DCGSNCGYECEITAENY 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,603
Number of Sequences: 5004
Number of extensions: 32273
Number of successful extensions: 139
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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