Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32312
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 55 6e-09
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 51 1e-07
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 50 1e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 1e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 49 4e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 9e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 1e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 46 4e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 45 5e-06
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 44 9e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 4e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 6e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 1e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 4e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 6e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.004
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.007
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 35 0.007
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.012
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 33 0.016
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 33 0.021
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 32 0.050
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 32 0.050
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.26
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 2.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 2.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 2.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 2.5
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 4.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 5.7
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 5.7
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 7.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 7.5
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 24 9.9
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 24 9.9
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 54.8 bits (126), Expect = 6e-09
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +2
Query: 131 DGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEX 310
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFAFV +++R A
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258
Query: 311 TLDTMDG 331
D +DG
Sbjct: 259 ARDRLDG 265
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
V NL++ TT E + +F + GE+ I + DR+T+ GF FV +FE +DA +L +
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISR 95
Query: 332 RMLDGR 349
LD R
Sbjct: 96 TSLDER 101
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 50.4 bits (115), Expect = 1e-07
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +2
Query: 131 DGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEX 310
D ++ + L+Y T D+ R F R G + I + R++ T +S G+AFV F RD +
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKV 156
Query: 311 TLDTMDGRMLDGRELXVQM 367
G ML+GR + V +
Sbjct: 157 AYKASAGLMLNGRRIVVDV 175
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.4 bits (115), Expect = 1e-07
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESR----GFAFVRFFERRDAEXTLD 319
V L+ T ++R +FE G V + IP R R +R G AFV F + D + ++
Sbjct: 48 VGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIE 107
Query: 320 TMDGRMLDGRELXVQMA 370
T++G+ LD RE+ VQ A
Sbjct: 108 TLNGKTLDDREIVVQKA 124
Score = 29.1 bits (62), Expect = 0.35
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEXTLDTMDGRMLDGRELXVQMA 370
R RGF FV F D ++ M+G+ + L V+ A
Sbjct: 255 RRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.8 bits (111), Expect = 4e-07
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +2
Query: 158 NLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDGRM 337
NLTY +DL+ +F G++ +++P D+ T +GFA++ F + DA +D +
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388
Query: 338 LDGRELXV 361
GR L V
Sbjct: 389 FQGRLLHV 396
Score = 45.2 bits (102), Expect = 5e-06
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
+ NL + T +D++ + G++ + +P+ ++ R +RGFAF F R+A + +
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAREAANAMRALKN 783
Query: 332 RMLDGRELXVQMA 370
L GR L +Q A
Sbjct: 784 THLLGRHLVLQYA 796
Score = 35.9 bits (79), Expect = 0.003
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRRVFERX-GEVGDIYIPRDRYTRE----SRGFAFVRFFERRDAE 307
++ V NL + T E+ ++VF+ G + + + R S GF FV F ++ A
Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679
Query: 308 XTLDTMDGRMLDGRELXVQMA 370
+ M+G +LDG +L ++++
Sbjct: 680 AAMHAMNGFVLDGHKLEIKLS 700
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 47.6 bits (108), Expect = 9e-07
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTM 325
L V + R ++L+++F + G V + I R+ T+ SRGF F+ F +A +D +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 326 DGRMLDGRELXVQMA 370
+ + GR L VQ A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 1e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTM 325
L V N+ + T ED++ +FE G++ +++ RD R S+GF ++++ A L+ M
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKM 400
Query: 326 DGRMLDGRELXV 361
+G L GR + V
Sbjct: 401 NGFDLAGRNMRV 412
Score = 39.9 bits (89), Expect = 2e-04
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
V L R T +L FE+ G V D I RD+ + S+G A+V F + + + G
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-ALSG 302
Query: 332 RMLDGRELXVQM 367
+ L G + VQ+
Sbjct: 303 KRLLGLPVIVQL 314
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 45.6 bits (103), Expect = 4e-06
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
+ NL + +D+ VF GE DI + RD+ T +S+GFAF+++ ++R +D M
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTN 94
Query: 332 -RMLD 343
++LD
Sbjct: 95 VKLLD 99
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 45.2 bits (102), Expect = 5e-06
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDT 322
S+ V N+ Y TPE+L+ F G V + I D++T +GFA++ F E L
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-L 114
Query: 323 MDGRMLDGRELXV 361
++G ML R L V
Sbjct: 115 LNGSMLHERPLKV 127
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 44.4 bits (100), Expect = 9e-06
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 116 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFER 295
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF F+ F
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
Query: 296 RDAEXTLDT---MDGRMLD 343
+ + +DG+++D
Sbjct: 215 KCVNEVMSKEHHLDGKIID 233
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.3 bits (95), Expect = 4e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDT 322
+L V NL ++T +DL F G + + + T E+RG+ FV F DA+
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKE 65
Query: 323 MDGRMLDGRELXVQMA 370
+ + L GR L + A
Sbjct: 66 LKNKKLHGRILRLDFA 81
Score = 41.9 bits (94), Expect = 5e-05
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +2
Query: 125 RIDGMVSLKVDNLTYRTT-PEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRD 301
R D L + NL + P+ L F + G+V +I IP R GFAFV +R+
Sbjct: 102 RQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKA 160
Query: 302 AEXTLDTMDGRMLDGRELXVQMA 370
AE +++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.5 bits (93), Expect = 6e-05
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +2
Query: 104 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVR 283
S P P+ D + V NL + E L R F G + + I RD T +GFA+++
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 284 FFERRDAEXTLDTMDGRMLDGRELXVQMA 370
F + + L + +M +GR L + A
Sbjct: 318 FKDTMGVDKALLLNEKKMPEGRTLRIMRA 346
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
V NL++ T +DL F G++ I +P D + +GF +V F + A+ ++ M+G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428
Query: 332 RMLDGR 349
+ GR
Sbjct: 429 HFIAGR 434
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +2
Query: 152 VDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDG 331
V L++ + L + FE G + + D + S+G+ +V F A+ +
Sbjct: 267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326
Query: 332 RMLDGRELXVQMA 370
+ +DGR + + ++
Sbjct: 327 KEIDGRMVNLDLS 339
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.3 bits (90), Expect = 1e-04
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDT 322
++ + NL + T L + + G V +I+IPRDR GF F F +D E
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 323 MDGRMLDGRELXVQMA 370
++ L G+ + V A
Sbjct: 72 LNQVKLFGKPIRVNRA 87
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.7 bits (86), Expect = 4e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 131 DGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRF 286
D V L V NL ++ E L+ F+R G+V + IP D+ + +G+AFV F
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 173 TTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDGRMLDGRE 352
T EDL +F R G++ + RD+ T +S +AF+ F + E M ++D
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 353 LXVQMA 370
+ V +
Sbjct: 315 IHVDFS 320
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.001
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = +2
Query: 140 VSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLD 319
V+L + NL E L+ F G + I D + S+GF FV + +A +
Sbjct: 364 VNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVT 422
Query: 320 TMDGRMLDGRELXVQMA 370
M+ RML G+ L V +A
Sbjct: 423 EMNQRMLAGKPLYVALA 439
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTM 325
L V N+ ++ +D+ F G+V + IP+ R+ + +GF +V +DAE L
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RF-NQHKGFGYVVMTTNQDAENALSAA 816
Query: 326 DGRMLDGRELXVQMA 370
G+ L R L V ++
Sbjct: 817 -GKQLGNRVLNVVLS 830
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.004
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRRVF-ERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLD 319
S+ V +L+ D+ +F R I D T SRG+ FVRF + D + L
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 320 TMDGRMLDGRELXVQMA 370
M G++ R + V +A
Sbjct: 247 EMQGQICGDRPIRVGLA 263
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.007
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 116 PPPRIDGMVS--LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFF 289
PP ++ V+ L + NL+++ T E++ +F R G V I + T ++RG AFV +
Sbjct: 2 PPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGN---TVQTRGTAFVVYE 58
Query: 290 ERRDAEXTLDTMDGRMLDGRELXV 361
+DA + + G R L V
Sbjct: 59 NVQDARRACEKLSGYNFMDRYLVV 82
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 34.7 bits (76), Expect = 0.007
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 224 DIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDGRMLD--GRELXVQMA 370
DI IPR TR SR FAFV + + RDAE + GR L+ G L V+ A
Sbjct: 37 DIPIPR---TRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.9 bits (74), Expect = 0.012
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +2
Query: 113 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFE 292
RP ++G + + V + T E + +F G V ++++ DR T +G+A + +
Sbjct: 2 RPAKSVEGYIII-VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYAT 60
Query: 293 RRDAEXTLDTMDGRMLDGRELXVQMA 370
A+ +D + +LD +L V A
Sbjct: 61 LEQAQKAVDEKNLSLLD-EKLEVDFA 85
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.5 bits (73), Expect = 0.016
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +2
Query: 128 IDGMVSLKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAE 307
+D + + NL + + + + G++ + ++ S+GF F F DAE
Sbjct: 306 LDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
Query: 308 XTLDTMDGRMLDGRELXVQMA 370
+ +DG+ G +L Q A
Sbjct: 366 VAISGLDGKDTYGNKLHAQFA 386
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.1 bits (72), Expect = 0.021
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 182 EDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDGRMLDGR 349
+D+ E+ G V ++ + Y +E G VRF +AE + M GR DGR
Sbjct: 274 DDITEEAEKCGRVTNVVL----YDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGR 325
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 31.9 bits (69), Expect = 0.050
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRF 286
L V NL + TT DL+ F + G++ + + T + +GF FV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.9 bits (69), Expect = 0.050
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTM 325
L V L + + +R F + G V + + R+R T S+ +AF+ F A +TM
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 326 DGRMLDGREL 355
+L G+ L
Sbjct: 167 HNYLLYGKLL 176
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 29.5 bits (63), Expect = 0.26
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +2
Query: 143 SLKVDNLTYRTTPEDLRR----VFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEX 310
+L V+NL + DLR +F G V DI + T + RG A V FF+ A
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAI 61
Query: 311 TLDTMDGRMLDGRELXVQMA 370
+ + + G+E+ +Q A
Sbjct: 62 AMKALKNFIFFGKEMKIQYA 81
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 2.5
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 143 SLKVDNL--TYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTL 316
+L V NL T T L +F G + + + S+G+ FV F + A
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 317 DTMDGRMLDGRELXVQMA 370
DT++G M+ + + V A
Sbjct: 443 DTLNGMMVGKKRIFVCFA 460
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 284 FFERRDAEXTLDTMDGRML 340
F++ RDA LD +DGR++
Sbjct: 336 FYDTRDASFALDELDGRII 354
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 146 LKVDNLTYRTTPEDLRRVFERXGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTM 325
L V + + T ED+ F+ G++ D + GF FV + RDA ++
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIVNDF 57
Query: 326 DGRMLDGRELXVQMA 370
G+ G + V+ A
Sbjct: 58 QGKEFMGSRIVVEPA 72
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 161 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 54
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 4.3
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 173 TTPEDLRRVFERX-GEVGDIYIPRDRYTRESRGFAFVRFFERRDAEXTLDTMDGRMLDGR 349
T +D+ + R E GDI R SRG AF+ + +A+ + M + LD
Sbjct: 182 TPTDDIEEIVSRHFAEWGDIERIR---VLNSRGIAFITYLNEANAQFAKEAMAHQSLDHD 238
Query: 350 E 352
E
Sbjct: 239 E 239
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 5.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 89 ILLKMSYGRPPPRIDGMVSLKVDNLTYRTT-PEDLRRVFERXGEVGDI 229
ILL+ + + D M S + + L +R PED+R FE G GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEXTLDTMDGRMLDG-RELXVQM 367
S+G A + F DA + +GR++DG R++ V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 254 LCTDLWECRYHQLLRXFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 111
L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 203 LSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 200 FERXGEVGDIYIPRDRYTRESRGFA--FVRFFERRDAEXTLDTMDGRMLDGREL 355
F + G++ I I + + G ++ + + DA + +DG + DGR L
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHL 195
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 251 CTDLWECRYHQLLRXFRKRGVSLQAS 174
C +W+C+ Q + F +RG+ + S
Sbjct: 232 CDGIWDCKSSQQVVEFVRRGIVARQS 257
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 9.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -1
Query: 449 YDGGNETWTCACD 411
Y+GG +TW C+ D
Sbjct: 99 YEGGYKTWECSLD 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,765
Number of Sequences: 5004
Number of extensions: 29761
Number of successful extensions: 120
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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