Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32307
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 41  RPYYIFDLKGSYIFLDTFSSLYKIYLL 121
           R YY++   G Y FLDT      IY +
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTI 187


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 41  RPYYIFDLKGSYIFLDTFSSLYKIYLL 121
           R YY++   G Y FLDT      IY +
Sbjct: 161 RSYYVYHSHGDYFFLDTTIKRSLIYTI 187


>Z68214-3|CAA92445.1|  399|Caenorhabditis elegans Hypothetical
           protein C10C5.3 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 266 NEIENRFNKXT*MAGKDWVYEFIKRHSDLAL 174
           NE+ N+ ++    AG+   YEF K HSDL L
Sbjct: 280 NEMRNKLDQWVKDAGEGVTYEFSK-HSDLKL 309


>AF067216-2|AAC17527.2|  343|Caenorhabditis elegans Hypothetical
           protein C35E7.8 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -2

Query: 131 NQVQVNRFY--TNLKKCQEK-YNFPSGRIYNMDETGIV 27
           ++V+ NRF     +K+  +K Y   SGRIYN  E  +V
Sbjct: 240 DEVENNRFLIVVRVKEISDKVYQISSGRIYNEQEGRVV 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,030,948
Number of Sequences: 27780
Number of extensions: 141377
Number of successful extensions: 297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)