Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32307
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 122 QVNRFYTNLKKCQEKYNFPSGRIYN 48
           +V R Y    +C+    F SGR Y+
Sbjct: 412 RVRRRYQPAFRCKPSQRFASGRYYS 436


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 140 IGFNQVQVNRFYTNLKKCQEKYN 72
           + F  V +++ YT   KC    N
Sbjct: 451 VKFESVNIDKLYTYFDKCDTLIN 473


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 140 IGFNQVQVNRFYTNLKKCQEKYN 72
           + F  V +++ YT   KC    N
Sbjct: 451 VKFESVNIDKLYTYFDKCDTLIN 473


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = +3

Query: 210 DPIFSSHLCXFIKSILYFISFCKFVNHFSQCLQWL 314
           + ++  ++      I   I     + H+S CLQ+L
Sbjct: 233 EEVYFLNMASVFMRIFNLICMMLLIGHWSGCLQFL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,155
Number of Sequences: 438
Number of extensions: 1618
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)