Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32300
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    56   2e-09
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.86 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    24   6.1  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    24   6.1  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   6.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    24   6.1  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    23   8.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    23   8.1  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 55.6 bits (128), Expect = 2e-09
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +2

Query: 188 TSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYD 310
           +S +   K +TVRDALN A++EEM+RD++VF++GEEVAQY+
Sbjct: 29  SSSSNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYN 69


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 138 DDFNAILNIMSLLNNFCNT*TSKVVYWRGKILVLSKMILNSR 13
           D F  +  I  + N F N+ +  +VY+    L LS++ L  R
Sbjct: 704 DSFTCVSGIYDIPNKFQNSESRIIVYYSNNTLYLSELWLPQR 745


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 170 SRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 274
           +R+SF    AL +   T+R+ LN+  D+  + + K
Sbjct: 143 TRKSFVELNALQTSIDTIRNELNELRDQLNDSESK 177


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 200 ELSMWQNCDGIIE*ASREQPAMILMP 123
           EL +W+  DGI     R+ P   L+P
Sbjct: 243 ELQIWKEVDGIFTADPRKVPTARLLP 268


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 304 LSDFLSQNEDFLVSLHLL 251
           L  F+S N  FLV +HL+
Sbjct: 26  LRSFMSNNRKFLVHIHLI 43


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 120 LNIMSLLNNFCNT*TSKVVYWR 55
           L  +SLL NFCNT  S+ VY R
Sbjct: 535 LYAVSLLYNFCNT-LSRDVYTR 555


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 131 KSSPAVLGMLTRLSRRSFATSKALASKPVTVRDA 232
           ++SP     L  L R S A +KA  S  V V+DA
Sbjct: 626 RTSPLTARTLETLIRLSTAHAKARLSSVVEVKDA 659


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 92  KLFNSDIIFKMALKSSPAVLGMLTRLSRRSFA 187
           K+FN +++   A  S  A + ++   SRRS A
Sbjct: 255 KIFNKELLLNSANHSLEAYMDLINDESRRSTA 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,211
Number of Sequences: 5004
Number of extensions: 18996
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)