Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32300
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 51 2e-07
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 50 3e-07
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 33 0.047
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 31 0.14
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 1.3
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 28 1.8
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 28 1.8
04_04_0650 + 26950912-26951397,26951552-26951728 28 1.8
01_03_0292 - 14738016-14738316,14738570-14738655,14739002-147391... 27 3.1
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 27 4.1
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 4.1
12_01_0135 + 1042889-1044255,1045368-1045809 26 5.4
11_01_0133 + 1121392-1122731,1123417-1123858 26 5.4
01_06_0206 + 27526171-27526815 26 5.4
06_03_1151 + 28030415-28030633,28030730-28030921,28031003-280311... 26 7.2
12_01_0962 - 9579051-9579707,9579804-9580706 25 9.5
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190... 25 9.5
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 25 9.5
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 25 9.5
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47... 25 9.5
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 50.8 bits (116), Expect = 2e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Frame = +2
Query: 128 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 292
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 293 EVAQY 307
EV +Y
Sbjct: 69 EVGEY 73
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/41 (53%), Positives = 31/41 (75%)
Frame = +2
Query: 185 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQY 307
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEY 53
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 152 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQY 307
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHY 103
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 170 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQY 307
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHY 86
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 122 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 274
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 223 KRCFKSSDRRGDGERRESLRFGRGSRSIRW 312
KR F+ + RG ++ L FGRGSR W
Sbjct: 551 KRFFREHNMRGS-HNKDVLTFGRGSRENTW 579
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 203 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEV 298
A K V + A+NQA+ ++ D + +V GE+V
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDV 77
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 137 SPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEME 262
SPA L + RL R ++ +++ PV +D Q +EE E
Sbjct: 10 SPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEE 51
>01_03_0292 -
14738016-14738316,14738570-14738655,14739002-14739115,
14739299-14739668,14739769-14739977,14740037-14740145,
14740257-14740378,14740873-14740979,14741393-14741447
Length = 490
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/61 (21%), Positives = 32/61 (52%)
Frame = -1
Query: 189 VAKLRRDNRVSIPRTAGDDFNAILNIMSLLNNFCNT*TSKVVYWRGKILVLSKMILNSRM 10
+A + +N +S P+T +++ +++ LL+ + ++W+ K+L NSR+
Sbjct: 24 MAMVSVENNLSPPKTLQKLSDSLTSMLPLLSELADIIPRDTLFWKLKLLKSGAAYANSRL 83
Query: 9 N 7
+
Sbjct: 84 H 84
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 229 CFKSSDRRGDGERRESLRFGRGSRSIRW 312
C K +RG G+R ESL + R + W
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSW 37
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 229 CFKSSDRRGDGERRESLRFGRGSRSI 306
C S+ RRGDGE L FG S+
Sbjct: 1027 CKDSASRRGDGEGSNILSFGTAGCSV 1052
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 236 NQAIDEEMERDEKVFVLGEEVAQ 304
NQAI E ER+E+V ++ ++ Q
Sbjct: 333 NQAIQEAFEREERVHIIDLDIMQ 355
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 236 NQAIDEEMERDEKVFVLGEEVAQ 304
NQAI E ER+E+V ++ ++ Q
Sbjct: 324 NQAIQEAFEREERVHIIDLDIMQ 346
>01_06_0206 + 27526171-27526815
Length = 214
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 159 SIPRTAGDDFNAILNIMSLLNNFCNT*TSKVVYWRGKILVLSKMILNSRM 10
++PRT GD+ + + S + + ++ V W I + ++ I +SR+
Sbjct: 95 ALPRTDGDEARFLFKVASFVETYWPEGHTRFVGWCSDIEISAEEIRSSRL 144
>06_03_1151 +
28030415-28030633,28030730-28030921,28031003-28031165,
28041140-28041573
Length = 335
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 189 VAKLRRDNRVSIPRTAGDDFNA-ILNIMSLLNNF 91
VA RRD RVSI + A D A +N LL++F
Sbjct: 144 VATGRRDGRVSIKQEALDQIPAPTMNFTDLLSSF 177
>12_01_0962 - 9579051-9579707,9579804-9580706
Length = 519
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 113 IFKMALKSSPAVLGMLTRLSRRSFATS-KALASKP 214
+F+M L S PAV+ L+R + T+ ALAS+P
Sbjct: 69 LFRMRLGSVPAVVISKPDLARAALTTNDAALASRP 103
>10_01_0169 -
1899491-1899666,1901358-1901638,1902468-1902477,
1902696-1902786,1903993-1904031,1904117-1904405,
1904488-1904658,1904737-1905623,1905711-1906157,
1906236-1906460,1906536-1906943
Length = 1007
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 220 CKRCFKSSDRRGDGERRESLRFGRGSR 300
C + S RR G+RR R GRG R
Sbjct: 854 CNIGWNSGVRREKGQRRRRHRLGRGGR 880
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 138 DDFNAILNIMSLLNNFCNT*TSKVVYW---RGKILVLSKMI 25
DDF ++++S+ NFC+ S V W RGK +V +I
Sbjct: 369 DDFPD-MDVISISGNFCSDKKSAAVNWIEGRGKSVVCEAVI 408
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 25.4 bits (53), Expect = 9.5
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 104 SDIIFKMALKSSPAVLGM-LTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVF 280
S I K+ K S LGM +TR ++ + S P ++RDAL +A E D+K+
Sbjct: 662 SKFIDKVVRKCS--ALGMVMTRKPCYEHVSNMEVLSDPKSLRDALIEAKRAAEEEDKKLQ 719
Query: 281 VL 286
+L
Sbjct: 720 LL 721
>03_01_0057 +
476172-476283,476337-476449,476532-476634,477089-477210,
477303-477497,477627-477701,478082-478179,478328-478421
Length = 303
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 173 RRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVA 301
R ++KALA + V R A+N+ + + + + LGE VA
Sbjct: 68 RNDIGSAKALAKEVVRSRKAVNRLYENKAQLNSISMHLGEIVA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,293,389
Number of Sequences: 37544
Number of extensions: 124641
Number of successful extensions: 338
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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