Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32300
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical ...    60   4e-10
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    29   0.68 
Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical pr...    26   4.8  
DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium depend...    26   4.8  
AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion transpo...    26   4.8  
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    26   4.8  
AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transpor...    26   4.8  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    25   8.4  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    25   8.4  
AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AF038606-5|AAB92024.2|  352|Caenorhabditis elegans Hypothetical
           protein C04C3.3 protein.
          Length = 352

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 26/42 (61%), Positives = 36/42 (85%)
 Frame = +2

Query: 185 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYD 310
           A +   A+  +TVRDALNQA+DEE++RD++VF++GEEVAQYD
Sbjct: 15  AGTSTRAASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYD 56


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 131 KSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKV 277
           K S +++  L  L  R+ ATS    ++P T  D L++   EEM+R E +
Sbjct: 22  KRSSSLIASL--LGSRNGATSSKTINEPTTTEDELDEESMEEMKRRELI 68


>Z75541-1|CAA99853.3| 1119|Caenorhabditis elegans Hypothetical
           protein F52B5.1 protein.
          Length = 1119

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 IIFKMALKSSPAVLGMLTRLSRRSFAT 190
           IIF M +  + A++  +TR +  SFAT
Sbjct: 523 IIFLMVVTDASALVSFITRFTEESFAT 549


>DQ178237-1|ABA18179.1| 1161|Caenorhabditis elegans sodium dependent
           chloride bicarbonateanion exchanger alternative variant
           a protein.
          Length = 1161

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 IIFKMALKSSPAVLGMLTRLSRRSFAT 190
           IIF M +  + A++  +TR +  SFAT
Sbjct: 565 IIFLMVVTDASALVSFITRFTEESFAT 591


>AY887903-1|AAX34415.1| 1119|Caenorhabditis elegans anion
           transporter ABTS-1 protein.
          Length = 1119

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 IIFKMALKSSPAVLGMLTRLSRRSFAT 190
           IIF M +  + A++  +TR +  SFAT
Sbjct: 523 IIFLMVVTDASALVSFITRFTEESFAT 549


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/25 (32%), Positives = 20/25 (80%)
 Frame = +2

Query: 203 ASKPVTVRDALNQAIDEEMERDEKV 277
           A +P+T+ +A ++A+ +E+ +D+K+
Sbjct: 360 AKRPLTLEEAYDEALSQELLQDQKM 384


>AF004926-1|AAC16758.1| 1119|Caenorhabditis elegans HCO3 transporter
           protein.
          Length = 1119

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 110 IIFKMALKSSPAVLGMLTRLSRRSFAT 190
           IIF M +  + A++  +TR +  SFAT
Sbjct: 523 IIFLMVVTDASALVSFITRFTEESFAT 549


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 219 VTGLEARAFDVAKLRRDNRVSIPRTAGDDFNAILNIMSLLN 97
           V  L   A+ + K+R D R SIP      F  I N M  LN
Sbjct: 345 VCALPVAAYRLGKMRTDGRGSIPSEGFLVFEDIKNQMIKLN 385


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 144 AGDDFNAILNIMSLLNNFCNT*TSKVVYWRGK 49
           AGD+ N ++  +S+ +    T T   + WR K
Sbjct: 231 AGDELNGVIGNISIFSMISFTHTFYTIIWRSK 262


>AC006641-1|AAF39824.2|  376|Caenorhabditis elegans Hypothetical
           protein F45D11.10 protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 92  KLFNSDIIFKMALKSSPAVLGMLTRLSRRSFATSKALASKPVT 220
           +LFNS   +K+   +SP +L    R     F   K   S P+T
Sbjct: 16  RLFNSSASWKIKHGTSPKLLKFTPRTDGSEFLFEKQKFSNPLT 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,224,023
Number of Sequences: 27780
Number of extensions: 105673
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)