Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32300
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 133 IIAGCSRDAHSIIPSQFCHIESSGF*AGD 219
           I+ GC+R AH   P     ++   +  GD
Sbjct: 7   IVLGCTRSAHFARPGGDYSLDEIEWDGGD 35


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 219 VTGLEARAFDVAKLRRDNRVSIPRTAGDDFNAILNIMSLLNNFCNT 82
           VTG      D+   +R ++  +      + NA+ +  +LLNN  +T
Sbjct: 366 VTGASKSHGDLELRQRSSKSLLANVLDLEDNALASHNNLLNNVYST 411


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +3

Query: 42  LRSYLANKPPCWFRCC 89
           +R  +   P CW++ C
Sbjct: 479 IRDMIGYYPCCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +3

Query: 42  LRSYLANKPPCWFRCC 89
           +R  +   P CW++ C
Sbjct: 532 IRDMIGYYPCCWWKIC 547


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 152 REQPAMILMPF*I*CH 105
           R+ P+M L+P  I CH
Sbjct: 646 RKMPSMPLLPRPISCH 661


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,621
Number of Sequences: 438
Number of extensions: 1169
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)