Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32297
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    24   5.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    23   7.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    23   9.6  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    23   9.6  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 1   ELVSSFFFLVQIKRKVCDLDVGL 69
           E++ SF  L + K K CDL++G+
Sbjct: 87  EVIKSFI-LTKSKEKPCDLEMGI 108


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 104 ICSIIKILHDLSSNRCEPGWFLSFNIYNILVRKD*ILQLY*VXLN 238
           I  +  +LH+ S + C    F+S    N+ + K  IL ++ V +N
Sbjct: 40  IKQVDNLLHNKSKDECTHALFISIQCANVQMVKH-ILSVFDVDVN 83


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 246  LIKFNXTQYNCNI*SFRTKIL*ILKDRNQPGSHRFELRSCKILMIEQIKIL 94
            LI+ N +Q+NC+       IL +LK+  Q  S   +L  C  L++E   +L
Sbjct: 1977 LIRCNQSQFNCD-------ILQLLKENKQMSS---QLHECFQLLLEIRNVL 2017


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 66  SNIEVANFSFYLN 28
           SN E+ANF F+ N
Sbjct: 284 SNFEIANFKFFRN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,025
Number of Sequences: 5004
Number of extensions: 11006
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)