Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32297
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   3.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   5.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   7.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 270 NNY*FK*NLIKFNXTQYN 217
           NNY +  N  K+N   YN
Sbjct: 320 NNYNYNNNNYKYNYNNYN 337


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 276 N*NNY*FK*NLIKFNXTQYNCN 211
           N NNY +  N   +N   YN N
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNN 346


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 101 LICSIIKILHDLSSNRCE 154
           L+ +  ++LH L+S +CE
Sbjct: 400 LLSAYGELLHALTSGKCE 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,113
Number of Sequences: 438
Number of extensions: 740
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)