Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32294
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    29   0.24 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   5.2  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   6.8  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    23   9.0  

>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 128 DSEASETALPASDAEKSETNTVSLWNDDVTPSKNVKSVAADVSVTADGN 274
           DSE++   LP  D+   +     LWN D    K+V+ ++ +  + A GN
Sbjct: 182 DSESTPILLPLIDSLNHKPKQPILWNSDFQDEKSVQLISQE--LVAKGN 228


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 125  VDSEASETALPASDAEKSETNTVSLWNDDVTPSKNVKSVAADVSVTADGN 274
            V S  SET+        S T+  S W  + + S    SVAA V+ T+  +
Sbjct: 905  VTSTGSETSSVVGSGTDSATS--SSWTAETSSSAITSSVAASVTPTSSSS 952


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 119 ADVDSEASETALPASDAEKSETNTVSLWNDDVTP 220
           A  +S +S  A PASDA+   T  +  W +   P
Sbjct: 196 AGSNSLSSYNACPASDADDFTTPALEAWRNVYMP 229


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 176 SETNTVSLWNDDVTPSKNVKSVAADVS 256
           S  NTV +W+ + +P   ++S ++ +S
Sbjct: 216 SADNTVGIWDFERSPETTLESFSSSIS 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,554
Number of Sequences: 5004
Number of extensions: 14165
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)