Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32290
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 198 5e-52
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 154 1e-38
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 27 2.5
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 3.3
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 3.3
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 3.3
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 5.8
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.6
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 198 bits (484), Expect = 5e-52
Identities = 97/197 (49%), Positives = 124/197 (62%)
Frame = +2
Query: 83 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 262
W +V MGPPD I GITEAYKKD KK+NLG G YRDD GKP+VLPSVR+AE L S+ L
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99
Query: 263 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAKA 442
+ EYAPI+G ++ KLA+G+ IK++ + Q++SGTGAL + F+ Y +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157
Query: 443 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDFAGSTRGYIKNSRRFIILLHAC 622
K I++ PTWGNH + + L K Y+Y+DP T G D G IILLHAC
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAPDGSIILLHAC 217
Query: 623 AHNPTGVDPQPNDWEQL 673
AHNPTGVDP W+ +
Sbjct: 218 AHNPTGVDPTKAQWDDI 234
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 154 bits (373), Expect = 1e-38
Identities = 75/195 (38%), Positives = 106/195 (54%), Gaps = 3/195 (1%)
Frame = +2
Query: 89 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 265
N++ D I + Y +D PKKVN+ VGAYRDD GKP++LP+V+KA +I+ + N
Sbjct: 8 NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67
Query: 266 HEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAK-- 439
HEY PI+G +T A A++ F + ++ ++Q++SGTGA L FI Y K
Sbjct: 68 HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127
Query: 440 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDFAGSTRGYIKNSRRFIILLHA 619
+++ PTW H + L + Y Y+D K FD+ G I LLHA
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAPEGSIFLLHA 187
Query: 620 CAHNPTGVDPQPNDW 664
CAHNPTG+DP W
Sbjct: 188 CAHNPTGIDPTREQW 202
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 529 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 413
+T L++ + G+ RV S RR P +LC S++ + L
Sbjct: 80 LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 241 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 134
F C+ D R N +LI S CS + FF +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -3
Query: 205 FSLIISICS-NTKIYFFRMCVLLV 137
F+L+ +CS N+K++FFR VL +
Sbjct: 564 FALVDELCSLNSKLWFFRKSVLTI 587
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 241 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 134
F C+ D R N +LI S CS + FF +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 669 CSQSLGWGSTPVGLCAHACNRIMNLREF 586
C SLG GS G+C A + L F
Sbjct: 406 CQDSLGMGSCASGVCTSASRQCKKLTNF 433
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -3
Query: 460 REPDLLCLSVVFRYELESKAESASAGQCLYSTVAL--IFDDRAVFSKSQFSYSISICGLT 287
R P+L L + R E+ S YST +L F D++V S S S S ++
Sbjct: 2 RRPNLDRLRLKSRQGFETSVSKPSTPS--YSTYSLSPTFSDKSVLSPSTMSDSYALSSTY 59
Query: 286 TDGS 275
T GS
Sbjct: 60 TAGS 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,018
Number of Sequences: 5004
Number of extensions: 71117
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -