Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32290
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 210 1e-54
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 189 2e-48
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 95 3e-20
03_05_0942 - 29014183-29014332,29014640-29015185 30 1.5
01_05_0379 + 21630223-21631188 30 2.0
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 3.4
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 3.4
01_06_0324 - 28485196-28486098 29 3.4
12_02_0680 + 21903520-21904093,21904474-21905162 29 4.5
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 29 4.5
01_06_1021 - 33883594-33884583 29 4.5
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 6.0
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 28 6.0
02_01_0305 + 2041370-2043114,2043764-2044121 28 6.0
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 28 7.9
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 210 bits (512), Expect = 1e-54
Identities = 103/203 (50%), Positives = 131/203 (64%), Gaps = 1/203 (0%)
Frame = +2
Query: 68 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 247
ASS+ + + P D ILG+T AY KD P KVNLGVGAYR +EGKP VL VR+AE++L
Sbjct: 2 ASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQML 61
Query: 248 -HSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFIT 424
++ EY PI+G A + AKL FG DSP I+ TVQ LSGTG+LR+G EF+
Sbjct: 62 INNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLA 121
Query: 425 KHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDFAGSTRGYIKNSRRFI 604
+HY + + I++P PTWGNHP++ L + YRY+DP T G DF G I
Sbjct: 122 RHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAI 180
Query: 605 ILLHACAHNPTGVDPQPNDWEQL 673
+LLHACAHNPTGVDP + WEQ+
Sbjct: 181 VLLHACAHNPTGVDPTLDQWEQI 203
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 189 bits (460), Expect = 2e-48
Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 1/212 (0%)
Frame = +2
Query: 44 IVGCTGLXASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPS 223
++G + ++W+ +V+ D ILG+TEA+ D P KVN+GVGAYRDD GKP VL
Sbjct: 20 LMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLEC 79
Query: 224 VRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALR 403
VR+AE + + +N EY P+ G + KLA+GE+ IK+K VQ LSGTGA R
Sbjct: 80 VREAERRI-AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACR 138
Query: 404 LGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDFAGSTRGYI 583
L +F K + +I++PTPTW NH I +P K + Y+ P++ G DFAG I
Sbjct: 139 LFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAG-LMDDI 196
Query: 584 KNS-RRFIILLHACAHNPTGVDPQPNDWEQLS 676
KN+ LLHACAHNPTGVDP W ++S
Sbjct: 197 KNAPDGSFFLLHACAHNPTGVDPSEEQWREIS 228
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 95.5 bits (227), Expect = 3e-20
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +2
Query: 380 LSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDF 559
LSGTGA RL +F + + +I++PTPTW NH I +P + + Y+ P++ G DF
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDF 126
Query: 560 AGSTRGYIKNS-RRFIILLHACAHNPTGVDPQPNDWEQLS 676
AG IKN+ LLHACAHNPTGVDP W ++S
Sbjct: 127 AG-LMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQWREIS 165
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 68 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGV 178
A ++ + +V+ D ILG+TEA+ D P KVN+GV
Sbjct: 30 AMASLFGHVEPASKDPILGVTEAFLADPSPDKVNVGV 66
>03_05_0942 - 29014183-29014332,29014640-29015185
Length = 231
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 454 APDAYLGKPPANLQHPQLAAQEIPLLRSQDQWFRFCREHSRIYQK 588
AP +P A QH + +E+P +DQ+ +CRE I K
Sbjct: 116 APPQAPPQPQAQRQHRVVNGEEVPF-EVEDQYIHYCRESRTIVHK 159
>01_05_0379 + 21630223-21631188
Length = 321
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 535 IEVTVFLVRQVEGVADLRVVSPSRRREPD--LLCLSVVFRYELESKAESASAGQCLYS 368
+E+T R VA + V P + EPD + S + R E +++AE+A YS
Sbjct: 185 VELTDLFARAFGKVAGVDTVKPPKEPEPDRRWMTTSALLRAEAKAEAEAAKENHYSYS 242
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 170 DLLF*DVCPSCMLL*CLRLHLADPSEHCSTRCC 72
DLL D CPS L CL + + HCS+ C
Sbjct: 743 DLLCCDNCPSTFHLACLGIKMPSGDWHCSSCIC 775
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 473 GNHPQICNTLNLPHKKYRYFDPKTNGFDFAG 565
GN Q C T +P KY+ DPK + + G
Sbjct: 186 GNWSQFCKTFEVPVVKYQQMDPKGDAWRKGG 216
>01_06_0324 - 28485196-28486098
Length = 300
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 473 GNHPQICNTLNLPHKKYRYFDPKTNGFDFAG 565
GN Q C T +P KY+ DPK + + G
Sbjct: 189 GNWSQFCKTFEVPVVKYQQMDPKGDAWRKGG 219
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 479 HPQICNTLNLPHKKYRYFDPKTNGFDFA--GSTRGYIKNSRRFIILLHACAHNPTGVDPQ 652
H IC P +++ P++ FA G T Y S F L+ CAH DP
Sbjct: 237 HTLICYWKARPGREHE-LTPESGFPTFASYGDTCIYSTPSMEFPGLIKVCAHGGAPCDPD 295
Query: 653 PNDW 664
DW
Sbjct: 296 RRDW 299
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 569 TRGYIKNSRRFIILLHACAHNPTGVDP-QPNDW 664
TRGY+K SR +L AC T ++ QP +W
Sbjct: 309 TRGYVKGSRNLQLLGIACTTLATRIEENQPYNW 341
>01_06_1021 - 33883594-33884583
Length = 329
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -1
Query: 363 LLLFLMTGLSSPKASLATASVYVASP--LMGAYS*LSPLLWRISSAFL 226
+LLF ++ LS+ A AS+Y A P + + + L P+L R+ FL
Sbjct: 87 ILLFTLSLLSTAAAVFTVASLYAAKPASIASSLAALPPILPRLLRTFL 134
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 110 DVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 250
D+ + YK+D K LG+ AYR P +LPSV + H
Sbjct: 80 DIAIDSYHRYKEDVGIMK-GLGLNAYRFSVSWPRILPSVEPFVTLFH 125
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -1
Query: 558 KSKPLVLGSK*RYFLCGKLRVLQICGWFPQVGVGSQISF 442
+++PL++G G+ RVL+ GW P G+G+ +++
Sbjct: 793 ENRPLLIGED---LTEGEARVLEEYGWVPNSGLGTMLNY 828
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = -1
Query: 417 NSSPRRRAPVPDSVCTVQLLLFLMTGLSSPKASLATASVYVASPLMGAYS*LSPLLWRIS 238
+S+ R A P S T + ++P +S A A+P A + L R+S
Sbjct: 44 SSAARHAAAAPSSAAT-------LATAAAPSSSSAATLAAAAAPSSAAVAVLPEAARRVS 96
Query: 237 SAFLTEGKTNGFPSSSL 187
+A L E + N FP SL
Sbjct: 97 AASLLE-ELNAFPEMSL 112
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 397 SPPWTRVHNETLR*GKGDLAPDAYLGKPPANLQ--HPQLAAQEIPLLRSQDQWFR 555
SPP T H T A A + PA++ QLA+ +PLL S D W R
Sbjct: 49 SPP-TTTHTTTTVTTTTTTASPAPVTTSPADVAWLKSQLASNSLPLLASHDAWHR 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,543,934
Number of Sequences: 37544
Number of extensions: 509119
Number of successful extensions: 1389
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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