Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32288
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 525 ERGCNSTNKISTFVYWQENTMEGH 596
           ER CN   ++  F+ W E   E +
Sbjct: 248 ERLCNRLGRVKRFINWHEPIPEAY 271


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 522 IERGCNSTNKISTFVYWQENTME 590
           IER   +T+KI  +  W E  +E
Sbjct: 375 IERNSGATDKIIRWCTWSEGDLE 397


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 522 IERGCNSTNKISTFVYWQENTME 590
           IER   +T+KI  +  W E  +E
Sbjct: 375 IERNSGATDKIIRWCTWSEGDLE 397


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 522 IERGCNSTNKISTFVYWQENTME 590
           IER   +T+KI  +  W E  +E
Sbjct: 375 IERNSGATDKIIRWCTWSEGDLE 397


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 151 KATEEDKNKNYEEALRLYE 207
           ++  +D+N+ Y+E  R YE
Sbjct: 2   RSCSKDRNREYKEKDRRYE 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,770
Number of Sequences: 438
Number of extensions: 2572
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)