Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32287
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    91   1e-19
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.081
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    31   0.25 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   1.8  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    27   2.3  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   4.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.4  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   7.1  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   9.4  
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...    25   9.4  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 52/82 (63%)
 Frame = +1

Query: 100 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 279
           K   EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 280 TPTSLEMEEGDTIEVYQQQTGG 345
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 324
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 604 WKLLKLPTAFGILIIY-LTTSYLRRIMLCVARLCYYVSQNYFLTLLQIQMMFL 449
           W L+ L  A GI+II+ L   +LR+  +     C Y+++ +F  L    M ++
Sbjct: 332 WFLISLAIAGGIVIIFVLIIKFLRQTRIIAKSSCDYITRYWFRVLFNACMRWV 384


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = -3

Query: 593 EVTYSIWYTYNLPYHKLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRV 414
           + T +  + Y L   K FET N      M+  V    P T TD   ++ KL  G    RV
Sbjct: 17  KTTLTSLFNYLLQNWKSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERV 75

Query: 413 HL---IDFDPLEMVN 378
           HL   +D++ L   N
Sbjct: 76  HLNTTLDYEVLRGQN 90


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 698 IRYHNRLGCIALLLQHYNSLAFVDVSTKHITMEIVEVTYSIWYTYNL--PYHKLFETHNA 525
           I+Y+ R  C  LL+  Y     ++V  +  + E+VE    +  T+ +   +H L   ++ 
Sbjct: 15  IKYYKRRNCYTLLIFKYKESKKINVYKRKKSDEVVEDCNKLKCTFFMIEEWHLLAILYDK 74

Query: 524 LRSSAMLLCVTKLLPNT 474
            +   +++C   L  NT
Sbjct: 75  SKYIKIIICSVLLKLNT 91


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 568 LIIYLTTSYLRRIMLCVARLCYYVSQNYFL 479
           L+I + T Y RRI+ C A LC  +   Y+L
Sbjct: 39  LLIVVITLY-RRIVECCASLCSLIFSKYYL 67


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 406  LILTHWRWSILKIIKFTLGTLLR 338
            L+  H RWS +++ K+ LGT  +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 198 HQFPERCVFLYFELYNCI 145
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 165  FELYNCIILT*YFQINVFVFSLLFI 91
            +E+YN +I + Y  INV  F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 198 HQFPERCVFLYFELYNCI 145
           H+FP  C+F  F  YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -3

Query: 665 LLLQHYNSLAFVDVSTKHITMEIVEVTYSIWYTYNLPYHKLFETHNALRSSAMLL 501
           L +  Y+SL        ++ ++++++ +S W    + ++ L    N +   AMLL
Sbjct: 211 LFVYDYSSLNPTYHCESNVVLKLIDLAHSRWTKNTIDHNTLIGVKNLIHCFAMLL 265


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 73  INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 216
           IN+K    A + K ++ HI +   G+ NA+V+ KI K   ++  +   CD+
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208


>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 629 DVSTKHITMEIVEVTYSIWYTYNLPYHKLFE 537
           D S   I +E V++  + WY   L  HK FE
Sbjct: 13  DKSRFEIELEFVQMLSNPWYLNFLAQHKYFE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,346
Number of Sequences: 5004
Number of extensions: 57577
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)